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(-) Description

Title :  RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH A5 RNA
 
Authors :  E. Lorentzen, E. Conti
Date :  04 Oct 05  (Deposition) - 23 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Biol. Unit 3:  M,N,O,P,Q,R  (1x)
Biol. Unit 4:  S,T,U,V,W,X  (1x)
Keywords :  Exosome, Rnase Ph, Rrp41, Rrp42, Phosphorolytic, Exoribonuclease, Rna Degradation, Archaeal, Hydrolase, Exonuclease, Nuclease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Lorentzen, E. Conti
Structural Basis Of 3' End Rna Recognition And Exoribonucleolytic Cleavage By An Exosome Rnase Ph Core.
Mol. Cell V. 20 473 2005
PubMed-ID: 16285928  |  Reference-DOI: 10.1016/J.MOLCEL.2005.10.020

(-) Compounds

Molecule 1 - PROBABLE EXOSOME COMPLEX EXONUCLEASE 2
    Chains: A, C, E, G, I, K, M, O, Q, S, U, W
    EC Number: 3.1.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
 
Molecule 2 - PROBABLE EXOSOME COMPLEX EXONUCLEASE 1
    Chains: B, D, F, H, J, L, N, P, R, T, V, X
    EC Number: 3.1.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWX
Biological Unit 1 (1x): ABCDEF                  
Biological Unit 2 (1x):       GHIJKL            
Biological Unit 3 (1x):             MNOPQR      
Biological Unit 4 (1x):                   STUVWX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 40)

Asymmetric Unit (2, 40)
No.NameCountTypeFull Name
1AMP28Ligand/IonADENOSINE MONOPHOSPHATE
2CL12Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1AMP8Ligand/IonADENOSINE MONOPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1AMP8Ligand/IonADENOSINE MONOPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 4 (1, 8)
No.NameCountTypeFull Name
1AMP8Ligand/IonADENOSINE MONOPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG B:99 , GLY B:137 , SER B:138 , ARG B:139 , AMP B:404BINDING SITE FOR RESIDUE CL B 301
02AC2SOFTWAREARG D:99 , GLY D:137 , SER D:138 , ARG D:139BINDING SITE FOR RESIDUE CL D 301
03AC3SOFTWAREGLY F:137 , SER F:138 , ARG F:139 , AMP F:404BINDING SITE FOR RESIDUE CL F 301
04AC4SOFTWAREARG H:99 , GLY H:137 , SER H:138 , ARG H:139 , AMP H:404BINDING SITE FOR RESIDUE CL H 301
05AC5SOFTWAREARG J:99 , GLY J:137 , SER J:138 , ARG J:139 , AMP J:404BINDING SITE FOR RESIDUE CL J 301
06AC6SOFTWAREARG L:99 , GLY L:137 , SER L:138 , ARG L:139BINDING SITE FOR RESIDUE CL L 301
07AC7SOFTWAREARG N:99 , GLY N:137 , SER N:138 , ARG N:139 , AMP N:404BINDING SITE FOR RESIDUE CL N 301
08AC8SOFTWAREARG P:2 , ARG P:99 , GLY P:137 , SER P:138 , ARG P:139BINDING SITE FOR RESIDUE CL P 301
09AC9SOFTWAREARG R:99 , GLY R:137 , SER R:138 , ARG R:139BINDING SITE FOR RESIDUE CL R 301
10BC1SOFTWAREARG R:2 , ARG T:99 , GLY T:137 , SER T:138 , ARG T:139BINDING SITE FOR RESIDUE CL T 301
11BC2SOFTWAREARG V:99 , GLY V:137 , SER V:138 , ARG V:139 , AMP V:404BINDING SITE FOR RESIDUE CL V 301
12BC3SOFTWAREARG X:99 , GLY X:137 , SER X:138 , ARG X:139 , AMP X:404BINDING SITE FOR RESIDUE CL X 301
13BC4SOFTWARETYR A:75 , LEU A:84 , ARG B:98 , AMP B:402BINDING SITE FOR RESIDUE AMP B 401
14BC5SOFTWAREARG A:112 , ARG A:119 , ARG B:98 , AMP B:401 , AMP B:403BINDING SITE FOR RESIDUE AMP B 402
15BC6SOFTWAREARG A:112 , ARG A:116 , ASP B:182 , AMP B:402 , AMP B:404BINDING SITE FOR RESIDUE AMP B 403
16BC7SOFTWAREMET B:83 , THR B:88 , ARG B:99 , ALA B:134 , ALA B:136 , SER B:138 , ARG B:139 , GLU B:179 , ASP B:182 , ASP B:188 , CL B:301 , AMP B:403BINDING SITE FOR RESIDUE AMP B 404
17BC8SOFTWARETYR E:75 , LEU E:84 , ARG F:98 , AMP F:402BINDING SITE FOR RESIDUE AMP F 401
18BC9SOFTWAREARG E:112 , ARG E:119 , ARG F:98 , AMP F:401 , AMP F:403BINDING SITE FOR RESIDUE AMP F 402
19CC1SOFTWAREARG E:112 , ASP F:182 , AMP F:402 , AMP F:404BINDING SITE FOR RESIDUE AMP F 403
20CC2SOFTWARETHR F:88 , ARG F:99 , ALA F:134 , ALA F:136 , SER F:138 , ARG F:139 , GLU F:179 , ASP F:182 , ASP F:188 , CL F:301 , AMP F:403BINDING SITE FOR RESIDUE AMP F 404
21CC3SOFTWARETYR G:75 , LEU G:84 , ILE G:85 , ASP G:115 , ARG G:119 , ARG H:98 , AMP H:402BINDING SITE FOR RESIDUE AMP H 401
22CC4SOFTWAREARG G:112 , ARG G:119 , ARG H:98 , AMP H:401 , AMP H:403BINDING SITE FOR RESIDUE AMP H 402
23CC5SOFTWAREARG G:112 , ASP H:182 , AMP H:402 , AMP H:404BINDING SITE FOR RESIDUE AMP H 403
24CC6SOFTWARETHR H:88 , ARG H:99 , ALA H:134 , ASP H:135 , ALA H:136 , SER H:138 , ARG H:139 , GLU H:179 , ASP H:182 , ASP H:188 , CL H:301 , AMP H:403BINDING SITE FOR RESIDUE AMP H 404
25CC7SOFTWARETYR I:75 , LEU I:84 , ILE I:85 , ARG J:98 , AMP J:402BINDING SITE FOR RESIDUE AMP J 401
26CC8SOFTWAREARG I:112 , ASP I:115 , ARG J:98 , AMP J:401 , AMP J:403BINDING SITE FOR RESIDUE AMP J 402
27CC9SOFTWAREARG I:112 , ASP J:182 , AMP J:402 , AMP J:404BINDING SITE FOR RESIDUE AMP J 403
28DC1SOFTWAREMET J:83 , THR J:88 , ARG J:99 , ALA J:134 , ASP J:135 , ALA J:136 , SER J:138 , ARG J:139 , GLU J:179 , ASP J:182 , ASP J:188 , CL J:301 , AMP J:403BINDING SITE FOR RESIDUE AMP J 404
29DC2SOFTWARETYR M:75 , LEU M:84 , ILE M:85 , ARG N:98 , AMP N:402BINDING SITE FOR RESIDUE AMP N 401
30DC3SOFTWAREARG M:112 , ASP M:115 , ARG N:98 , AMP N:401 , AMP N:403BINDING SITE FOR RESIDUE AMP N 402
31DC4SOFTWAREARG M:112 , ARG M:116 , ASP N:182 , AMP N:402 , AMP N:404BINDING SITE FOR RESIDUE AMP N 403
32DC5SOFTWAREMET N:83 , THR N:88 , ARG N:99 , ALA N:136 , SER N:138 , ARG N:139 , GLU N:179 , ASP N:182 , ASP N:188 , CL N:301 , AMP N:403BINDING SITE FOR RESIDUE AMP N 404
33DC6SOFTWARETYR U:75 , LEU U:84 , ILE U:85 , ASP U:115 , ARG U:119 , ARG V:98 , AMP V:402BINDING SITE FOR RESIDUE AMP V 401
34DC7SOFTWAREARG U:112 , ASP U:115 , ARG U:119 , ARG V:98 , AMP V:401 , AMP V:403BINDING SITE FOR RESIDUE AMP V 402
35DC8SOFTWAREARG U:112 , ARG U:116 , ASP V:182 , AMP V:402 , AMP V:404BINDING SITE FOR RESIDUE AMP V 403
36DC9SOFTWARETHR V:88 , ARG V:99 , ALA V:134 , ASP V:135 , ALA V:136 , SER V:138 , ARG V:139 , GLU V:179 , ASP V:182 , ASP V:188 , CL V:301 , AMP V:403BINDING SITE FOR RESIDUE AMP V 404
37EC1SOFTWARETYR W:75 , LEU W:84 , AMP X:402BINDING SITE FOR RESIDUE AMP X 401
38EC2SOFTWAREARG W:112 , ASP W:115 , ARG W:119 , ARG X:98 , AMP X:401 , AMP X:403BINDING SITE FOR RESIDUE AMP X 402
39EC3SOFTWAREARG W:112 , ASP X:182 , MET X:183 , AMP X:402 , AMP X:404BINDING SITE FOR RESIDUE AMP X 403
40EC4SOFTWAREMET X:83 , THR X:88 , ARG X:99 , ALA X:134 , ASP X:135 , ALA X:136 , SER X:138 , ARG X:139 , GLU X:179 , ASP X:182 , CL X:301 , AMP X:403BINDING SITE FOR RESIDUE AMP X 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2C38)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2C38)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2C38)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2C38)

(-) Exons   (0, 0)

(no "Exon" information available for 2C38)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38a1 A:1-191 automated matches                                                                                                                                                              d2c38a2 A:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeeee.............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 A   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain B from PDB  Type:PROTEIN  Length:241
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:241
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
          RRP41_SULSO     8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains d2c38b1 B:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38b2 B:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee..eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 B   8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 


Chain C from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38c1 C:1-191 automated matches                                                                                                                                                              d2c38c2 C:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeee..............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 C   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain D from PDB  Type:PROTEIN  Length:247
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
          RRP41_SULSO     2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains ------d2c38d1 D:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38d2 D:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 D   2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain E from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38e1 E:1-191 automated matches                                                                                                                                                              d2c38e2 E:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeee.hhhhh........hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 E   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain F from PDB  Type:PROTEIN  Length:241
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:241
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
          RRP41_SULSO     8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains d2c38f1 F:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38f2 F:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee..eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 F   8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 


Chain G from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38g1 G:1-191 automated matches                                                                                                                                                              d2c38g2 G:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeeee.............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 G   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain H from PDB  Type:PROTEIN  Length:241
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:241
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
          RRP41_SULSO     8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains d2c38h1 H:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38h2 H:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 H   8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 


Chain I from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38i1 I:1-191 automated matches                                                                                                                                                              d2c38i2 I:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeee..............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 I   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain J from PDB  Type:PROTEIN  Length:241
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:241
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
          RRP41_SULSO     8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains d2c38j1 J:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38j2 J:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee..eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 J   8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 


Chain K from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38k1 K:1-191 automated matches                                                                                                                                                              d2c38k2 K:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeeee.............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 K   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain L from PDB  Type:PROTEIN  Length:247
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
          RRP41_SULSO     2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains ------d2c38l1 L:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38l2 L:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................ee..eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 L   2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain M from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38m1 M:1-191 automated matches                                                                                                                                                              d2c38m2 M:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeeee.............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 M   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain N from PDB  Type:PROTEIN  Length:241
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:241
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
          RRP41_SULSO     8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains d2c38n1 N:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38n2 N:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee..eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 N   8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 


Chain O from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38o1 O:1-191 automated matches                                                                                                                                                              d2c38o2 O:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeeee.............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 O   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain P from PDB  Type:PROTEIN  Length:248
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
          RRP41_SULSO     1 MREMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains -------d2c38p1 P:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38p2 P:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 P   1 MREMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        


Chain Q from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38q1 Q:1-191 automated matches                                                                                                                                                              d2c38q2 Q:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeeee..............hhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 Q   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain R from PDB  Type:PROTEIN  Length:247
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
          RRP41_SULSO     2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains ------d2c38r1 R:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38r2 R:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 R   2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain S from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38s1 S:1-191 automated matches                                                                                                                                                              d2c38s2 S:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeee.hhhhh........hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 S   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain T from PDB  Type:PROTEIN  Length:247
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
          RRP41_SULSO     2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains ------d2c38t1 T:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38t2 T:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 T   2 REMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain U from PDB  Type:PROTEIN  Length:270
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLG 274
               SCOP domains d2c38u1 U:1-191 automated matches                                                                                                                                                              d2c38u2 U:192-274 automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eeeeeeee.............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 U   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLG 274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270    
                                                                                                                                                                                                        175  180                                                                                              


Chain V from PDB  Type:PROTEIN  Length:239
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:239
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238         
          RRP41_SULSO     9 RPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEG 247
               SCOP domains d2c38v1 V:9-155 Exosome complex exonuclease 1, ECX1                                                                                                d2c38v2 V:156-247 Exosome complex exonuclease 1, ECX1                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 V   9 RPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEG 247
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238         


Chain W from PDB  Type:PROTEIN  Length:271
 aligned with RRP42_SULSO | Q9UXC0 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
          RRP42_SULSO     1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
               SCOP domains d2c38w1 W:1-191 automated matches                                                                                                                                                              d2c38w2 W:192-275 automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........hhhhhhhhhhhhh...............eeeee.......eeeeeee..eeeeeeeeeeee..........eee..eee.............hhhhhhhhhhhhhhhhh....hhhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeee.----.eeeeeeeeee.......eeeeeeee..eeee..hhhhhhhh.eeeeeee.....eeeeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 W   1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQ----ISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270     
                                                                                                                                                                                                        175  180                                                                                               


Chain X from PDB  Type:PROTEIN  Length:241
 aligned with RRP41_SULSO | Q9UXC2 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:241
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
          RRP41_SULSO     8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
               SCOP domains d2c38x1 X:8-155 Exosome complex exonuclease 1, ECX1                                                                                                 d2c38x2 X:156-248 Exosome complex exonuclease 1, ECX1                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee..eeeee.......eeeeeee..eeeeeeeeeeee..hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhh........eeeeeee....eee..hhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c38 X   8 ERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV 248
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 48)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: Ribonuclease PH domain 2-like (52)
(-)
Superfamily: Ribonuclease PH domain 2-like (52)
(-)
Family: automated matches (11)
(-)
Protein domain: automated matches (11)
(-)
Sulfolobus solfataricus [TaxId: 2287] (4)
1ad2c38a2A:192-275
1bd2c38c2C:192-275
1cd2c38e2E:192-275
1dd2c38g2G:192-275
1ed2c38i2I:192-275
1fd2c38k2K:192-275
1gd2c38m2M:192-275
1hd2c38o2O:192-275
1id2c38q2Q:192-275
1jd2c38s2S:192-275
1kd2c38u2U:192-274
1ld2c38w2W:192-275
(-)
Family: Ribonuclease PH domain 2-like (41)
(-)
Protein domain: Exosome complex exonuclease 1, ECX1 (11)
(-)
Sulfolobus solfataricus [TaxId: 2287] (9)
2ad2c38b2B:156-248
2bd2c38d2D:156-248
2cd2c38f2F:156-248
2dd2c38h2H:156-248
2ed2c38j2J:156-248
2fd2c38l2L:156-248
2gd2c38n2N:156-248
2hd2c38p2P:156-248
2id2c38r2R:156-248
2jd2c38t2T:156-248
2kd2c38v2V:156-247
2ld2c38x2X:156-248
(-)
Fold: Ribosomal protein S5 domain 2-like (306)
(-)
Superfamily: Ribosomal protein S5 domain 2-like (306)
(-)
Family: Ribonuclease PH domain 1-like (45)
(-)
Protein domain: automated matches (6)
(-)
Sulfolobus solfataricus [TaxId: 2287] (4)
3ad2c38a1A:1-191
3bd2c38c1C:1-191
3cd2c38e1E:1-191
3dd2c38g1G:1-191
3ed2c38i1I:1-191
3fd2c38k1K:1-191
3gd2c38m1M:1-191
3hd2c38o1O:1-191
3id2c38q1Q:1-191
3jd2c38s1S:1-191
3kd2c38u1U:1-191
3ld2c38w1W:1-191
(-)
Protein domain: Exosome complex exonuclease 1, ECX1 (11)
(-)
Sulfolobus solfataricus [TaxId: 2287] (9)
4ad2c38b1B:8-155
4bd2c38d1D:8-155
4cd2c38f1F:8-155
4dd2c38h1H:8-155
4ed2c38j1J:8-155
4fd2c38l1L:8-155
4gd2c38n1N:8-155
4hd2c38p1P:8-155
4id2c38r1R:8-155
4jd2c38t1T:8-155
4kd2c38v1V:9-155
4ld2c38x1X:8-155

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2C38)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2C38)

(-) Gene Ontology  (14, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,I,K,M,O,Q,S,U,W   (RRP42_SULSO | Q9UXC0)
molecular function
    GO:0017091    AU-rich element binding    Interacting selectively and non-covalently with a region of RNA containing frequent adenine and uridine bases.
biological process
    GO:0006401    RNA catabolic process    The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
    GO:0016075    rRNA catabolic process    The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000177    cytoplasmic exosome (RNase complex)    A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
    GO:0000178    exosome (RNase complex)    A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
    GO:0000176    nuclear exosome (RNase complex)    A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.

Chain B,D,F,H,J,L,N,P,R,T,V,X   (RRP41_SULSO | Q9UXC2)
molecular function
    GO:0000175    3'-5'-exoribonuclease activity    Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
    GO:0016896    exoribonuclease activity, producing 5'-phosphomonoesters    Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0006401    RNA catabolic process    The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
    GO:0090503    RNA phosphodiester bond hydrolysis, exonucleolytic    The chemical reactions and pathways involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0016075    rRNA catabolic process    The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000177    cytoplasmic exosome (RNase complex)    A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
    GO:0000178    exosome (RNase complex)    A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.

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  RRP41_SULSO | Q9UXC2
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  RRP42_SULSO | Q9UXC0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RRP41_SULSO | Q9UXC2: 2br2 2c37 2c39 2je6 2jea 2jeb 3l7z 4ba1 4ba2
        RRP42_SULSO | Q9UXC0: 2br2 2c37 2c39 2je6 2jea 2jeb 3l7z 4ba1 4ba2

(-) Related Entries Specified in the PDB File

2br2 RNASE PH CORE OF THE ARCHAEAL EXOSOME
2c37 RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA
2c39 RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH ADP