SCOP 2.04 - JenaLib Tree Browser

Fold: Lesion bypass DNA polymerase (Y-family), little finger domain (103)

Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain (103)

Family: automated matches (41)

Protein domain: automated matches (41)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (7)

2R8J	A:390-509; B:390-509	STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2-D(GPG)-CISPLATIN CONTAINING DNA
2WTF	A:390-509; B:390-508	DNA POLYMERASE ETA IN COMPLEX WITH THE CIS-DIAMMINEPLATINUM (II) 1,3-GTG INTRASTRAND CROSS-LINK
2XGP	A:390-510; B:390-510	YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-2-ACETYLAMINOFLUORENE CONTAINING DNA
2XGQ	A:390-510; B:390-510	STRUCTURE OF YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-N-ACETYL-2-AMINOANTHRACENE CONTAINING DNA
3MFH	A:390-512	DNA POLYMERASE ETA IN COMPLEX WITH UNDAMAGED DNA
3OHA	A:390-512	YEAST DNA POLYMERASE ETA INSERTING DCTP OPPOSITE AN 8OXOG LESION
3OHB	A:390-512	YEAST DNA POLYMERASE ETA EXTENDING FROM AN 8-OXOG LESION

Sulfolobus acidocaldarius [TaxId: 2285] (1)

4NLG

A:242-344

Y-FAMILY DNA POLYMERASE CHIMERA DBH-DPO4(243-245)-DBH

Sulfolobus solfataricus [TaxId: 2287] (2)

2ATL	A:241-341; B:1241-1341	UNMODIFIED INSERTION TERNARY COMPLEX
2AU0	A:241-341; B:1241-1341	UNMODIFIED PREINSERTION BINARY COMPLEX

Sulfolobus solfataricus [TaxId: 273057] (31)

2BQ3	A:241-342	DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BQR	A:241-341	DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BQU	A:241-342	DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BR0	A:241-342	DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2C22	A:241-342	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C28	A:241-342	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2D	A:241-342	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2E	A:241-342	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2R	A:241-342	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2J6S	A:241-342	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.
2J6T	A:241-342	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.
2J6U	A:244-345	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DGTP.
2JEF	A:241-342	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEG	A:241-342	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEI	A:241-342	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEJ	A:241-342	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2UVR	A:241-342	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVU	A:241-343	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVV	A:241-343	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVW	A:241-342	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2V4Q	A:241-342	POST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH M1DG CONTAINING TEMPLATE DNA
2V4R	A:242-343	NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH DGTP SKIPPING THE M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE CYTOSINE
2V9W	A:241-344; B:241-343	COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2VA2	A:241-343; B:241-343	COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2VA3	A:241-343	COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2W8K	A:241-342	Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-NAPHTHYL-GUANINE ADDUCT IN SYN ORIENTATION
2W8L	A:241-342	Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION
2W9A	A:241-342	TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH INCOMING DGTP
2W9B	A:241-342; B:241-342	BINARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA
2W9C	A:241-342; B:241-342	TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH INCOMING DTTP
2XCP	A:241-342; B:241-342	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8-DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND DCTP - MAGNESIUM FORM

Family: Lesion bypass DNA polymerase (Y-family), little finger domain (62)

Protein domain: DinB homolog (DBH) (39)

Sulfolobus acidocaldarius [TaxId: 2285] (3)

3BQ0	A:242-344	PRE-INSERTION BINARY COMPLEX OF DBH DNA POLYMERASE
3BQ1	A:242-344	INSERTION TERNARY COMPLEX OF DBH DNA POLYMERASE
3BQ2	A:242-344	POST-INSERTION BINARY COMPLEX OF DBH DNA POLYMERASE

Sulfolobus solfataricus [TaxId: 2287] (2)

1K1Q	A:240-344; B:240-344	CRYSTAL STRUCTURE OF A DINB FAMILY ERROR PRONE DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS
1K1S	A:240-344	CRYSTAL STRUCTURE OF DINB FROM SULFOLOBUS SOLFATARICUS

Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287] (34)

1JX4	A:241-341	CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARY COMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
1JXL	A:241-341	CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARY COMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
1N48	A:241-342	Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION
1N56	A:241-341; B:241-341	Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION
1RYR	A:241-341	REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1RYS	A:241-341; B:241-341	REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1S0M	A:241-341; B:241-341	CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT IN A TERNARY COMPLEX WITH A DNA POLYMERASE
1S0N	A:241-341	SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S0O	A:241-341; B:241-341	SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S10	A:241-341	SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S97	A:241-341; B:241-341; C:241-341; D:241-341	DPO4 WITH GT MISMATCH
1S9F	A:241-341; B:241-341; C:241-341; D:241-341	DPO WITH AT MATCHED
2AGO	A:241-341	FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2AGP	A:241-341; B:241-341	FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2AGQ	A:241-341	FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2ASD	A:241-341; B:1241-1341	OXOG-MODIFIED INSERTION TERNARY COMPLEX
2ASJ	A:241-341; B:1241-1341	OXOG-MODIFIED PREINSERTION BINARY COMPLEX
2ASL	A:241-341; B:1241-1341	OXOG-MODIFIED POSTINSERTION BINARY COMPLEX
2IA6	A:241-341; B:241-341	BYPASS OF MAJOR BENZOPYRENE-DG ADDUCT BY Y-FAMILY DNA POLYMERASE WITH UNIQUE STRUCTURAL GAP
2IBK	A:241-341	BYPASS OF MAJOR BENZOPYRENE-DG ADDUCT BY Y-FAMILY DNA POLYMERASE WITH UNIQUE STRUCTURAL GAP
2IMW	P:241-348	MECHANISM OF TEMPLATE-INDEPENDENT NUCLEOTIDE INCORPORATION CATALYZED BY A TEMPLATE-DEPENDENT DNA POLYMERASE
2R8G	A:241-341	SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE
2R8H	A:241-341	SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE
2R8I	A:241-341	SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE
2RDI	A:241-352	SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: DPO4 IN APO AND BINARY/TERNARY COMPLEX FORMS
2RDJ	A:241-341; B:241-341	SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: DPO4 IN APO AND BINARY/TERNARY COMPLEX FORMS
3FDS	A:241-352	STRUCTURAL INSIGHT INTO RECRUITMENT OF TRANSLESION DNA POLYMERASE DPO4 TO SLIDING CLAMP PCNA
3PR4	A:241-341	DPO4 Y12A MUTANT INCORPORATING DADP OPPOSITE TEMPLATE DT
3QZ7	A:241-341	T-3 TERNARY COMPLEX OF DPO4
3QZ8	A:241-341	TT-4 TERNARY COMPLEX OF DPO4
4JUZ	A:241-341	TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA (ZERO PRIMER) WITH DNA POLYMERASE IV AND INCOMING DGTP
4JV0	A:241-341	RING-OPENING OF THE -OH-PDG ADDUCT IN TERNARY COMPLEXES WITH THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
4JV1	A:241-341	TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA WITH DNA (-1 PRIMER) POLYMERASE IV AND INCOMING DGTP
4JV2	A:241-341	TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA WITH DNA (-1 PRIMER) POLYMERASE IV AND INCOMING DATP

Protein domain: DNA polymerase eta (2)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (2)

1JIH	A:390-509; B:390-509	YEAST DNA POLYMERASE ETA
2R8K	A:390-509; B:390-509	STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2-D(GPG)-CISPLATIN CONTAINING DNA

Protein domain: DNA polymerase iota (19)

Human (Homo sapiens) [TaxId: 9606] (19)

1T3N	A:300-414; B:720-834	STRUCTURE OF THE CATALYTIC CORE OF DNA POLYMERASE IOTA IN COMPLEX WITH DNA AND DTTP
1ZET	A:300-414	X-RAY DATA DO NOT SUPPORT HOOGSTEEN BASE-PAIRING DURING REPLICATION BY HUMAN POLYMERASE IOTA
2ALZ	A:300-414	TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP
2DPI	A:300-414	TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP
2DPJ	A:300-414	STRUCTURE OF HPOLI WITH DNA AND DTTP
2FLL	A:300-414	TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH DNA AND DTTP
2FLN	A:300-414	BINARY COMPLEX OF CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA WITH DNA (TEMPLATE A)
2FLP	A:300-414	BINARY COMPLEX OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA WITH DNA (TEMPLATE G)
3G6X	A:300-414	TERNARY COMPLEX OF DNA POLYMERASE IOTA:DNA:DGTP WITH AN ABASIC SITE AT THE TEMPLATING POSITION
3GV5	B:300-414; D:300-415	HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DDADP
3GV7	B:300-414	HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DTTP
3GV8	B:300-414	HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DGTP
3H40	A:300-414	BINARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T
3H4B	A:300-414	TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T AND INCOMING DATP
3H4D	A:300-414	TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T AND INCOMING DGTP
3NGD	A:300-414	STRUCTURAL BASIS FOR PROFICIENT INCORPORATION OF DTTP OPPOSITE O6-METHYLGUANINE BY HUMAN DNA POLYMERASE IOTA
4EBC	A:300-414	CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
4EBD	A:300-414	CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
4EBE	A:300-414	CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA

Protein domain: DNA polymerase IV (1)

Escherichia coli [TaxId: 562] (1)

1UNN

C:; D:

COMPLEX OF BETA-CLAMP PROCESSIVITY FACTOR AND LITTLE FINGER DOMAIN OF POLIV

Protein domain: DNA polymerase kappa (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1T94

A:411-515; B:413-515

CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE KAPPA