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(-) Description

Title :  HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS
 
Authors :  J. -A. Feng, R. C. Johnson, R. E. Dickerson
Date :  17 Dec 93  (Deposition) - 30 Apr 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Protein-Dna Complex, Dna Binding Protein/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Feng, R. C. Johnson, R. E. Dickerson
Hin Recombinase Bound To Dna: The Origin Of Specificity In Major And Minor Groove Interactions.
Science V. 263 348 1994
PubMed-ID: 8278807
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'- D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3')
    Chains: B
    Engineered: YES
 
Molecule 2 - DNA (5'- D(*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3')
    Chains: C
    Engineered: YES
 
Molecule 3 - PROTEIN (HIN RECOMBINASE)
    Chains: A
    Engineered: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:52
 aligned with HIN_SALTY | P03013 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:52
                                   148       158       168       178       188  
            HIN_SALTY   139 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASRIKKRMN 190
               SCOP domains d1hcra_ A: HIN recombinase (DNA-binding domain)      SCOP domains
               CATH domains 1hcrA00 A:139-190 Homeodomain-like                   CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 1hcr A 139 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN 190
                                   148       158       168       178       188  


Chain B from PDB  Type:DNA  Length:14
                                              
                 1hcr B   2 TGTTTTTGATAAGA  15
                                    11    


Chain C from PDB  Type:DNA  Length:13
                                             
                 1hcr C  17 TCTTATCAAAAAC  29
                                    26
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HCR)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (HIN_SALTY | P03013)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000150    recombinase activity    Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
biological process
    GO:0015074    DNA integration    The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HIN_SALTY | P03013: 1ijw 1jj6 1jj8 1jko 1jkp 1jkq 1jkr

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