Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS (DG-420315 (TRIAZINE) COMPLEX)
 
Authors :  C. R. D. Lancaster, H. Michel
Date :  01 Aug 97  (Deposition) - 06 Apr 99  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  C,H,L,M
Keywords :  Photosynthetic Reaction Center, Secondary Quinone (Qb), Triazine Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. R. Lancaster, H. Michel
Refined Crystal Structures Of Reaction Centres From Rhodopseudomonas Viridis In Complexes With The Herbicide Atrazine And Two Chiral Atrazine Derivatives Also Lead To A New Model Of The Bound Carotenoid.
J. Mol. Biol. V. 286 883 1999
PubMed-ID: 10024457  |  Reference-DOI: 10.1006/JMBI.1998.2532
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOTOSYNTHETIC REACTION CENTER
    AtccDSM 133
    Cellular LocationINTRACYTOPLASMIC MEMBRANE (ICM)
    ChainsC
    CollectionDSM 133
    Organism ScientificBLASTOCHLORIS VIRIDIS
    Organism Taxid1079
 
Molecule 2 - PHOTOSYNTHETIC REACTION CENTER
    Cellular LocationINTRACYTOPLASMIC MEMBRANE (ICM)
    ChainsL
    CollectionDSM 133
    Organism ScientificBLASTOCHLORIS VIRIDIS
    Organism Taxid1079
 
Molecule 3 - PHOTOSYNTHETIC REACTION CENTER
    Cellular LocationINTRACYTOPLASMIC MEMBRANE (ICM)
    ChainsM
    CollectionDSM 133
    Organism ScientificBLASTOCHLORIS VIRIDIS
    Organism Taxid1079
 
Molecule 4 - PHOTOSYNTHETIC REACTION CENTER
    Cellular LocationINTRACYTOPLASMIC MEMBRANE (ICM)
    ChainsH
    CollectionDSM 133
    Organism ScientificBLASTOCHLORIS VIRIDIS
    Organism Taxid1079

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit CHLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 25)

Asymmetric/Biological Unit (10, 25)
No.NameCountTypeFull Name
1BCB4Ligand/IonBACTERIOCHLOROPHYLL B
2BPB2Ligand/IonBACTERIOPHEOPHYTIN B
3CET1Ligand/Ion2-CHLORO-4-ETHYLAMINO-6-(R(+)-2'-CYANO-4-BUTYLAMINO)-1,3,5-TRIAZINE
4FE21Ligand/IonFE (II) ION
5FME1Mod. Amino AcidN-FORMYLMETHIONINE
6HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
7LDA6Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
8MQ71Ligand/IonMENAQUINONE-7
9NS51Ligand/Ion15-CIS-1,2-DIHYDRONEUROSPORENE
10SO44Ligand/IonSULFATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS L:190 , HIS L:230 , HIS M:217 , GLU M:232 , HIS M:264BINDING SITE FOR RESIDUE FE2 M 500
02AC2SOFTWAREARG H:33 , ARG H:37 , TYR H:41 , HOH H:1061 , HOH H:1181 , ARG M:251 , HOH M:1062BINDING SITE FOR RESIDUE SO4 H 801
03AC3SOFTWAREHOH H:1233 , ASN L:199 , HIS M:143 , ARG M:265 , HOH M:1130BINDING SITE FOR RESIDUE SO4 M 802
04AC4SOFTWARELEU H:246 , ALA M:1 , ARG M:226 , HOH M:1237BINDING SITE FOR RESIDUE SO4 M 803
05AC5SOFTWARETRP M:23 , TYR M:50 , GLY M:52 , ALA M:53 , SER M:54 , SER M:133 , LDA M:704 , HOH M:1030 , HOH M:1066BINDING SITE FOR RESIDUE SO4 M 804
06AC6SOFTWAREHIS L:168 , MET L:174 , SER L:178 , VAL L:182 , MET L:185 , BCB L:302 , BPB L:401 , HOH L:993 , VAL M:155 , ILE M:158 , ILE M:177 , TRP M:178 , HIS M:180 , ILE M:181 , LEU M:184 , NS5 M:600 , BCB M:806BINDING SITE FOR RESIDUE BCB M 805
07AC7SOFTWAREPRO L:124 , MET L:127 , VAL L:157 , ASN L:158 , PHE L:160 , GLY L:161 , TRP L:167 , HIS L:168 , HIS L:173 , SER L:176 , PHE L:241 , GLY L:244 , GLY L:247 , THR L:248 , BCB L:304 , TYR M:195 , TYR M:208 , BCB M:805 , BCB M:806BINDING SITE FOR RESIDUE BCB L 302
08AC8SOFTWAREVAL L:157 , TYR L:162 , PHE L:181 , BCB L:302 , BCB L:304 , BPB L:401 , GLY M:62 , ALA M:65 , PHE M:148 , VAL M:155 , PHE M:187 , SER M:188 , PHE M:194 , TYR M:195 , HIS M:200 , SER M:203 , ILE M:204 , TYR M:208 , MET M:275 , ALA M:278 , ILE M:282 , BCB M:805BINDING SITE FOR RESIDUE BCB M 806
09AC9SOFTWAREPHE L:128 , PHE L:146 , ILE L:150 , HIS L:153 , LEU L:154 , VAL L:157 , BCB L:302 , BPB L:402 , GLY M:201 , ILE M:204 , GLY M:205 , TYR M:208 , GLY M:209 , LDA M:701 , BCB M:806 , HOH M:991BINDING SITE FOR RESIDUE BCB L 304
10BC1SOFTWAREPHE L:181 , MET L:185 , LEU L:189 , VAL L:220 , CET L:502 , ALA M:58 , PHE M:59 , ILE M:66 , SER M:123 , LEU M:124 , TRP M:127 , VAL M:131 , ILE M:144 , ASN M:147 , PHE M:148 , SER M:271 , MET M:275 , BCB M:805 , BCB M:806BINDING SITE FOR RESIDUE BPB L 401
11BC2SOFTWAREPHE L:97 , TRP L:100 , GLU L:104 , VAL L:117 , PHE L:121 , PRO L:124 , TYR L:148 , ILE L:150 , ALA L:237 , PHE L:241 , BCB L:304 , TYR M:208 , LEU M:212 , TRP M:250 , MQ7 M:501BINDING SITE FOR RESIDUE BPB L 402
12BC3SOFTWARETYR L:29 , GLY L:35 , TRP L:100 , BPB L:402 , ALA M:216 , HIS M:217 , ALA M:246 , TRP M:250 , ILE M:254 , ALA M:258BINDING SITE FOR RESIDUE MQ7 M 501
13BC4SOFTWARETYR C:56 , LYS C:57 , ASN C:58 , VAL C:59 , LYS C:60 , VAL C:61 , LEU C:62 , PHE C:70 , MET C:74 , THR C:78 , SER C:82 , CYS C:87 , CYS C:90 , HIS C:91 , LEU C:96 , ALA C:97 , TYR C:104 , ARG C:108 , VAL C:212BINDING SITE FOR RESIDUE HEM C 337
14BC5SOFTWARETYR C:89 , TYR C:102 , VAL C:106 , MET C:110 , LEU C:111 , MET C:113 , THR C:114 , CYS C:132 , CYS C:135 , HIS C:136 , PRO C:140 , LEU C:141 , PRO C:142 , LEU C:289 , ARG C:293 , PRO C:301 , HEM C:340BINDING SITE FOR RESIDUE HEM C 338
15BC6SOFTWAREVAL C:201 , ARG C:202 , VAL C:203 , VAL C:204 , MET C:233 , SER C:237 , CYS C:244 , CYS C:247 , HIS C:248 , PHE C:253 , GLU C:254 , ARG C:264 , ALA C:267 , TRP C:268 , ARG C:272 , HOH C:937 , HOH C:938 , HOH C:940 , HOH C:973 , ILE M:189BINDING SITE FOR RESIDUE HEM C 339
16BC7SOFTWAREHIS C:124 , VAL C:125 , THR C:128 , ILE C:236 , LEU C:240 , GLN C:263 , ILE C:266 , GLY C:270 , ILE C:271 , MET C:273 , VAL C:274 , ASP C:304 , CYS C:305 , CYS C:308 , HIS C:309 , THR C:313 , LYS C:314 , PRO C:315 , HEM C:338 , HOH C:967 , HOH C:1208BINDING SITE FOR RESIDUE HEM C 340
17BC8SOFTWAREPHE M:88 , GLY M:117 , MET M:120 , THR M:121 , GLY M:159 , CYS M:160 , TRP M:169 , VAL M:173 , GLY M:176 , BCB M:805BINDING SITE FOR RESIDUE NS5 M 600
18BC9SOFTWARELEU L:189 , GLU L:212 , ASN L:213 , PHE L:216 , VAL L:220 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , ALA L:226 , BPB L:401BINDING SITE FOR RESIDUE CET L 502
19CC1SOFTWAREARG H:33 , ASP H:56 , BCB L:304 , PHE M:256 , LDA M:705BINDING SITE FOR RESIDUE LDA M 701
20CC2SOFTWAREASP L:60 , PHE L:62 , TYR M:195 , TRP M:295 , ALA M:301BINDING SITE FOR RESIDUE LDA L 702
21CC3SOFTWAREPRO H:42 , VAL H:59 , TYR H:60 , LEU H:62 , PRO H:65 , HOH H:1183BINDING SITE FOR RESIDUE LDA H 703
22CC4SOFTWARESER M:126 , SER M:133 , SO4 M:804BINDING SITE FOR RESIDUE LDA M 704
23CC5SOFTWAREILE M:254 , PHE M:256 , LDA M:701BINDING SITE FOR RESIDUE LDA M 705
24CC6SOFTWAREPHE M:71 , ASN M:72 , ALA M:75 , TRP M:112BINDING SITE FOR RESIDUE LDA M 706

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 7PRC)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Pro C:5 -Pro C:6
2Leu C:152 -Pro C:153
3Gly C:329 -Pro C:330
4Gly M:47 -Pro M:48
5Tyr H:41 -Pro H:42
6Val H:78 -Pro H:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 7PRC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 7PRC)

(-) Exons   (0, 0)

(no "Exon" information available for 7PRC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain C from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d7prcc_ C: Photosynthetic reaction centre (cytochrome subunit)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 7prcC01 C:1-144,C:315-332 Photosynthetic Reaction Center, subunit C, domain 2                                                                   7prcC02 C:145-314 Photosynthetic Reaction Center, subunit C, domain 2                                                                                                     7prcC01            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee............eeehhhhhhhhhhhhh.............................hhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhh...........hhhhh................................hhhhhhhhhhh.........hhhhh.............................hhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhh..hhhhh.................hhhhh....................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7prc C   1 CFEPPPATTTQTGFRGLSMGEVLHPATVKAKKERDAQYPPALAAVKAEGPPVSQVYKNVKVLGNLTEAEFLRTMTAITEWVSPQEGCTYCHDENNLASEAKYPYVVARRMLEMTRAINTNWTQHVAQTGVTCYTCHRGTPLPPYVRYLEPTLPLNNRETPTHVERVETRSGYVVRLAKYTAYSALNYDPFTMFLANDKRQVRVVPQTALPLVGVSRGKERRPLSDAYATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVRDLNMNYLAPLNASLPASRLGRQGEAPQADCRTCHQGVTKPLFGASRLKDYPELGPIK 332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  

Chain H from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d7prch2 H:1-36                      d7prch1 H:37-258 Photosynthetic reaction centre                                                                                                                                                                                SCOP domains
               CATH domains -7prcH01 H:2-119 Photosynthetic Reaction Center, subunit H, domain 1                                                   7prcH02 H:120-258 Photosynthetic Reaction Center, subunit H, domain 2                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh.hhhhhh..................hhhhh.....eeee.....eeee...........eee........eee...hhhh.......................eee...................eee.....eeeeeeeeeee.......eeeeee.....eeeee...eee....eee....hhhhhh...........hhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 7prc H   1 mYHGALAQHLDIAQLVWYAQWLVIWTVVLLYLRREDRREGYPLVEPLGLVKLAPEDGQVYELPYPKTFVLPHGGTVTVPRRRPETRELKLAQTDGFEGAPLQPTGNPLVDAVGPASYAERAEVVDATVDGKAKIVPLRVATDFSIAEGDVDPRGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSVAGSARTALIPLGFCDVKKDKIVVTSILSEQFANVPRLQSRDQITLREEDKVSAYYAGGLLYATPERAESLL 258
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
                            1-FME                                                                                                                                                                                                                                                             

Chain L from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d7prcl_ L: L (light) subunit                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 7prcL01 L:1-160 Membrane spanning alpha-helix pairs                                                                                                             7prcL02 L:161-272 Membrane spanning alpha-helix pairs                                                           - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............................hhhhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7prc L   1 ALLSFERKYRVRGGTLIGGDLFDFWVGPYFVGFFGVSAIFFIFLGVSLIGYAASQGPTWDPFAISINPPDLKYGLGAAPLLEGGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLDWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLHGGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIHRLGLFLASNIFLTGAFGTIASGPFWTRGWPEWWGWWLDIPFWS 273
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270   

Chain M from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d7prcm_ M: M (medium) subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 7prcM01 M:1-143 Membrane spanning alpha-helix pairs                                                                                            7prcM02 M:144-302 Membrane spanning alpha-helix pairs                                                                                                          --------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................................hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7prc M   1 ADYQTIYTQIQARGPHITVSGEWGDNDRVGKPFYSYWLGKIGDAQIGPIYLGASGIAAFAFGSTAILIILFNMAAEVHFDPLQFFRQFFWLGLYPPKAQYGMGIPPLHDGGWWLMAGLFMTLSLGSWWIRVYSRARALGLGTHIAWNFAAAIFFVLCIGCIHPTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIEQITDRGTAVERAALFWRWTIGFNATIESVHRWGWFFSLMVMVSASVGILLTGTFVDNWYLWCVKHGAAPDYPAYLPATPDPASLPGAPK 323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 5)

Asymmetric/Biological Unit

(-) CATH Domains  (4, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 7PRC)

(-) Gene Ontology  (17, 47)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BCB  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    BPB  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CET  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FE2  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FME  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HEM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    LDA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MQ7  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NS5  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly C:329 - Pro C:330   [ RasMol ]  
    Gly M:47 - Pro M:48   [ RasMol ]  
    Leu C:152 - Pro C:153   [ RasMol ]  
    Pro C:5 - Pro C:6   [ RasMol ]  
    Tyr H:41 - Pro H:42   [ RasMol ]  
    Val H:78 - Pro H:79   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  7prc
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CYCR_BLAVI | P07173
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEH_BLAVI | P06008
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEL_BLAVI | P06009
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEM_BLAVI | P06010
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  CYCR_BLAVI | P07173
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEH_BLAVI | P06008
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEL_BLAVI | P06009
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEM_BLAVI | P06010
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYCR_BLAVI | P071731dxr 1prc 1r2c 1vrn 2i5n 2jbl 2prc 2wjm 2wjn 2x5u 2x5v 3d38 3g7f 3prc 3t6d 3t6e 4ac5 4cas 5m7j 5m7k 5m7l 5prc 6prc
        RCEH_BLAVI | P060081dxr 1prc 1r2c 1vrn 2i5n 2jbl 2prc 2wjm 2wjn 2x5u 2x5v 3d38 3g7f 3prc 3t6d 3t6e 4ac5 4cas 5m7j 5m7k 5m7l 5prc 6prc
        RCEL_BLAVI | P060091dxr 1prc 1r2c 1vrn 2i5n 2jbl 2prc 2wjm 2wjn 2x5u 2x5v 3d38 3g7f 3prc 3t6d 3t6e 4ac5 4cas 5m7j 5m7k 5m7l 5prc 6prc
        RCEM_BLAVI | P060101dxr 1prc 1r2c 1vrn 2i5n 2jbl 2prc 2wjm 2wjn 2x5u 2x5v 3d38 3g7f 3prc 3t6d 3t6e 4ac5 4cas 5m7j 5m7k 5m7l 5prc 6prc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 7PRC)