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(-) Description

Title :  CRYSTAL STRUCTURE OF THE I113M, F270M, K291M, L308M MUTANT OF SR1 DOMAIN OF HUMAN SACSIN
 
Authors :  M. Menade, G. Kozlov, K. Gehring
Date :  08 Mar 17  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Alpha-Beta Sandwich, Bergerat Fold, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Menade, J. -F. Trempe, H. Pande, S. Shenker, X. Li, G. Kozlov, K. Gehring
Structures Of Ubl And Hsp90-Like Domains Of Sacsin Provide Insight Into Pathological Mutations
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SACSIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 89-336
    Gene: SACS, KIAA0730
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNAJ HOMOLOG SUBFAMILY C MEMBER 29,DNAJC29

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5V46)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5V46)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:84 -Pro A:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V46)

(-) Exons   (0, 0)

(no "Exon" information available for 5V46)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhh..eeeeee....hhhhhhhhh..ee.......ee....hhhhhhhhh....eeeee.eeeee............eeeee...hhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeee.............hhhhhhhhhhhhhhhhhhhhhh.....eeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5v46 A  84 GPLGSFGQTTPPLVDFLKDILRRYPEGGQmLKELIQNAEDAGATEVKFLYDETQYGTETLWSKDmAPYQGPALYVYNNAVFTPEDWHGIQEIARSRKKDPLKVGRFGIGFNSVYHITDVPCIFSGDQIGmLDPHQTLFGPHESGQCWNLKDDSKEISELSDQFAPFVGIFGSTKETFINGNFPGTmFRFPLRLQPSQLSSNLYNKQmVLELFESFRADADTVLmFLKSVQDVSLYVREADGTEKLVFRVTSS 336
                                    93       103       113       123       133       143    |  153       163       173       184       194       204       214       224       234       244       254       264     | 274       284      |294       304   |   314       324       334  
                                                       113-MSE                            148-MSE                          181|                            214-MSE                                                 270-MSE              291-MSE          308-MSE                        
                                                                                                                            183                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhh..eeeeee....hhhhhhhhhh.ee.......ee....hhhhhhhhh....eeeee.eeeee............eeeee...hhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeee.............hhhhhhhhhhhhhhhhhhhhhh.....eeeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v46 B  93 TPPLVDFLKDILRRYPEGGQmLKELIQNAEDAGATEVKFLYDETQYGTETLWSKDmAPYQGPALYVYNNAVFTPEDWHGIQEIARSRKKDPLKVGRFGIGFNSVYHITDVPCIFSGDQIGmLDPHQTLFGPHESGQCWNLKDDSKEISELSDQFAPFVGIFGSTKETFINGNFPGTmFRFPLRLQPSQLSSNLYNKQmVLELFESFRADADTVLmFLKSVQDVSLYVREADGTEKLVFRVTS 335
                                   102       112|      122       132       142     | 152       162       172       183       193       203       213|      223       233       243       253       263      |273       283       293       303    |  313       323       333  
                                              113-MSE                            148-MSE                          181|                            214-MSE                                                 270-MSE              291-MSE          308-MSE                       
                                                                                                                   183
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V46)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V46)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V46)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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    Gly A:84 - Pro A:85   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SACS_HUMAN | Q9NZJ4: 1iur 3o10 5v44 5v45 5vsx 5vsz

(-) Related Entries Specified in the PDB File

5v44 5v45 5v47