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(-) Description

Title :  STRUCTURE OF THE UBL DOMAIN OF SACSIN
 
Authors :  J. -F. Trempe, H. Pande, S. Shenker, K. Gehring
Date :  13 May 17  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ubiquitin-Like, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Menade, J. -F. Trempe, H. Pande, S. Shenker, X. Li, G. Kozlov, K. Gehring
Structures Of Ubl And Hsp90-Like Domains Of Sacsin Provide Insight Into Pathological Mutations
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SACSIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX-6P1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UBL DOMAIN (UNP RESIDUES 2-85)
    Gene: SACS, KIAA0730
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNAJ HOMOLOG SUBFAMILY C MEMBER 29,DNAJC29

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5VSX)

(-) Sites  (0, 0)

(no "Site" information available for 5VSX)

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:17 -A:20
2A:72 -A:72
3B:17 -B:20

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5VSX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VSX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VSX)

(-) Exons   (0, 0)

(no "Exon" information available for 5VSX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:74
                                                                                                         
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................hhhhhhhhhhhhhh.hhhhheeee..ee.....hhhhhh......eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  5vsx A  6 NRWVPVTVLPGCVGCRTVAALASWTVRDVKERIFAETGFPVSEQRLWRGGRELSDWIKIGDLTNCHLFVNLQSK 81
                                    15        25        35        45        55        65  ||    77    
                                                                                         68|          
                                                                                          71          


Chain B from PDB  Type:PROTEIN  Length:74
                                                                                                         
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhhhhhhhhhhhhh.hhhhheeee..ee.....hhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  5vsx B  5 ENRWVPVTVLPGCVGCRTVAALASWTVRDVKERIFAETGFPVSEQRLWRGGRELSDWIKIGDLTSHLFVNLQSK 81
                                    14        24        34        44        54        64    ||  77    
                                                                                           69|        
                                                                                            73
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VSX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VSX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VSX)

(-) Gene Ontology  (11, 11)

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  5vsx
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SACS_HUMAN | Q9NZJ4: 1iur 3o10 5v44 5v45 5v46 5vsz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5VSX)