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(-) Description

Title :  CRYSTAL STRUCTURE OF THE F270M, K291M, L318M MUTANT OF SR1 DOMAIN OF HUMAN SACSIN
 
Authors :  M. Menade, G. Kozlov, K. Gehring
Date :  08 Mar 17  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Alpha-Beta Sandwich, Bergerat Fold, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Menade, J. -F. Trempe, H. Pande, S. Shenker, X. Li, G. Kozlov, K. Gehring
Structures Of Ubl And Hsp90-Like Domains Of Sacsin Provide Insight Into Pathological Mutations
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SACSIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 89-336
    Gene: SACS, KIAA0730
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNAJ HOMOLOG SUBFAMILY C MEMBER 29,DNAJC29

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5V45)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5V45)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5V45)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V45)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V45)

(-) Exons   (0, 0)

(no "Exon" information available for 5V45)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh....hhhhhhhhhhhhhh...eeeeeee..........hhhhhhhh..eeeeee....hhhhhh.........hhhhhhhhhh....eeeee.eeeee............eeeee...hhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeee.............hhhhhhhhhhhhhhhhhhhh.......eeeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v45 A  88 SFGQTTPPLVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYDETQYGTETLWSKDmAPYQGPALYVYNNAVFTPEDWHGDPLKVGRFGIGFNSVYHITDVPCIFSGDQIGmLDPHQTLFGPHESGQCWNLKDDSKEISELSDQFAPFVGIFGSTKETFINGNFPGTmFRFPLRLQPSQLSSNLYNKQmVLELFESFRADADTVLLFLKSVQDVSmYVREADGTEKLVFRVTS 335
                                    97       107       117       127       137       147|      157       167   ||  188       198       208     | 218       228       238       248       258       268 |     278       288  |    298       308       318       328       
                                                                                      148-MSE                171|                            214-MSE                                                 270-MSE              291-MSE                    318-MSE             
                                                                                                              183                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeeeeee..........hhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhhhh....eeeee.eeeee............eeeee...hhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeee.............hhhhhhhhhhhhhhhhhhhhhh.....eeeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v45 B  84 GPLGSFGQTTPPLVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYDETQYGTETLWSKDmAPYQGPALYVYNNAVFTPEDWHGIQEIGFNSVYHITDVPCIFSGDQIGmLDPHQTLFGPHESGQCWNLKDDSKEISELSDQFAPFVGIFGSTKETFINGNFPGTmFRFPLRLQPSQLSSNLYNKQmVLELFESFRADADTVLLFLKSVQDVSmYVREADGTEKLVFRVTS 335
                                    93       103       113       123       133       143    |  153       163       173||     200       210   |   220       230       240       250       260       270       280       290|      300       310       320       330     
                                                                                          148-MSE                   174|                   214-MSE                                                 270-MSE              291-MSE                    318-MSE             
                                                                                                                     192
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V45)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V45)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V45)

(-) Gene Ontology  (11, 11)

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  5v45
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SACS_HUMAN | Q9NZJ4: 1iur 3o10 5v44 5v46 5vsx 5vsz

(-) Related Entries Specified in the PDB File

5v44 5v46 5v47