PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5V1W
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (136 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF BHGH81 IN COMPLEX WITH LAMINARO-BIOSE
Authors
:
B. Pluvinage, A. B. Boraston
Date
:
02 Mar 17 (Deposition) - 28 Jun 17 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
(Alpha/Beta)6 Barrel, Glycoside Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pluvinage, A. Fillo, P. Massel, A. B. Boraston
The Quaternary Structure Of Beta-1, 3-Glucan Contributes To Its Recognition And Hydrolysis By A Multimodular Family 81 Glycoside Hydrolase
Structure 2017
[
close entry info
]
Hetero Components
(3, 21)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
4
Ligand/Ion
BETA-D-GLUCOSE
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
PO4
8
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:280 , GLU A:559 , ARG A:567 , HIS A:732 , PRO A:733 , HOH A:1248 , HOH A:1301 , HOH A:1308
binding site for residue PO4 A 805
02
AC2
SOFTWARE
MET A:578 , ASN A:582 , HIS A:640 , HOH A:944 , HOH A:1046 , HOH A:1082 , HOH A:1087 , HOH A:1256
binding site for residue PO4 A 806
03
AC3
SOFTWARE
ASP A:201 , TRP A:203 , SER A:213 , HIS A:217 , HIS A:219 , LYS A:253 , HOH A:955
binding site for residue PO4 A 807
04
AC4
SOFTWARE
HIS A:315 , SER A:579 , ASN A:582 , GLU A:583 , HIS A:589 , HOH A:944 , HOH A:1087
binding site for residue PO4 A 808
05
AC5
SOFTWARE
HIS A:170 , ASP A:189 , HOH A:993
binding site for residue PO4 A 809
06
AC6
SOFTWARE
GLU A:124 , GLU A:413 , ARG A:416 , ALA A:484 , HOH A:959
binding site for residue PO4 A 810
07
AC7
SOFTWARE
HIS A:641 , PRO A:642 , ASP A:643 , TYR A:644 , HOH A:903 , HOH A:994 , HOH A:1072
binding site for residue PO4 A 811
08
AC8
SOFTWARE
ARG A:368 , GLU A:685 , TYR A:712 , HIS A:716
binding site for residue PO4 A 812
09
AC9
SOFTWARE
TYR A:313 , THR A:336 , GLU A:591 , HOH A:905 , HOH A:1019 , HOH A:1192
binding site for residue EDO A 813
10
AD1
SOFTWARE
HIS A:120 , HIS A:129 , HIS A:131
binding site for residue EDO A 814
11
AD2
SOFTWARE
ASP A:155 , ASN A:157 , TYR A:160 , THR A:175 , VAL A:269 , ARG A:270
binding site for residue EDO A 815
12
AD3
SOFTWARE
ALA A:113 , PRO A:114 , HIS A:115 , HOH A:1444
binding site for residue EDO A 816
13
AD4
SOFTWARE
ARG A:101 , ARG A:103 , GLU A:105 , HIS A:108 , HOH A:1429
binding site for residue EDO A 817
14
AD5
SOFTWARE
ASP A:275 , TRP A:276 , THR A:277 , THR A:286 , THR A:288
binding site for residue EDO A 818
15
AD6
SOFTWARE
TYR A:387 , HIS A:458 , ASP A:466 , PHE A:469 , HIS A:470 , GLU A:546 , BGC A:801 , BGC A:804
binding site for residue EDO A 819
16
AD7
SOFTWARE
SER A:357 , LEU A:358 , GLN A:710 , HIS A:713 , TRP A:714 , HOH A:1068
binding site for residue EDO A 820
17
AD8
SOFTWARE
GLN A:171 , GLU A:186 , TYR A:187 , GLU A:188
binding site for residue EDO A 821
18
AD9
SOFTWARE
HIS A:458 , ARG A:463 , ASN A:465 , ASP A:466 , ALA A:529 , ASP A:530 , PHE A:535 , ASN A:540 , TRP A:615 , EDO A:819 , HOH A:923 , HOH A:933 , HOH A:976 , HOH A:1004 , HOH A:1008 , HOH A:1026 , HOH A:1069 , HOH A:1253
binding site for Poly-Saccharide residues BGC A 801 through BGC A 802
19
AE1
SOFTWARE
TYR A:387 , LYS A:391 , HIS A:458 , TRP A:616 , ILE A:626 , TRP A:664 , GLU A:699 , ARG A:704 , EDO A:819 , HOH A:1008 , HOH A:1017 , HOH A:1021 , HOH A:1027 , HOH A:1031 , HOH A:1077
binding site for Poly-Saccharide residues BGC A 803 through BGC A 804
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5V1W
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
