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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF APO HALOTAG
 
Authors :  N. P. Dunham, A. K. Boal
Date :  23 Feb 17  (Deposition) - 08 Mar 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Haloalkane Dehalogenase, Fluorogenic, Halo, Tag, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Liu, K. Miao, N. P. Dunham, H. Liu, M. Fares, A. K. Boal, X. Li, X. Zhang
The Cation-Pi Interaction Enables A Halo-Tag Fluorogenic Probe For Fast No-Wash Live Cell Imaging And Gel-Free Protein Quantification.
Biochemistry V. 56 1585 2017
PubMed-ID: 28221782  |  Reference-DOI: 10.1021/ACS.BIOCHEM.7B00056

(-) Compounds

Molecule 1 - HALOALKANE DEHALOGENASE
    Chains: A, B
    EC Number: 3.8.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Gene: DHAA
    Organism Scientific: RHODOCOCCUS RHODOCHROUS
    Organism Taxid: 1829

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2EDO5Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:26 , GLY A:28 , ARG A:30 , PRO A:174 , MET A:175binding site for residue EDO A 401
2AC2SOFTWAREGLY A:5 , THR A:6 , GLY A:7binding site for residue EDO A 402
3AC3SOFTWAREARG A:153 , ASN A:207 , HOH A:525binding site for residue EDO A 403
4AC4SOFTWAREASN A:41 , TRP A:107 , PRO A:206binding site for residue CL A 404
5AC5SOFTWAREPHE B:149 , THR B:172 , GLY B:176 , HOH B:520 , HOH B:575binding site for residue EDO B 401
6AC6SOFTWAREPHE B:8 , SER B:45 , ASP B:65 , LYS B:71 , HOH B:504 , HOH B:513binding site for residue EDO B 402
7AC7SOFTWAREASN B:41 , TRP B:107 , PRO B:206binding site for residue CL B 403
8AC8SOFTWARETRP B:228 , GLN B:231binding site for residue CL B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UY1)

(-) Cis Peptide Bonds  (6, 7)

Asymmetric Unit
No.Residues
1Asn A:41 -Pro A:42
2Glu A:214 -Pro A:215
3Thr A:242 -Pro A:243
4Asn B:41 -Pro B:42
5Glu B:214 -Pro B:215
6Thr B:242 -Pro B:243

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UY1)

(-) Exons   (0, 0)

(no "Exon" information available for 5UY1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uy1 A   4 IGTGFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYVWRNIIPHVAPTHRCIAPDLIGMGKSDKPDLGYFFDDHVRFMDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAFMEFIRPIPTWDEWPEFARETFQAFRTTDVGRKLIIDQNVFIEGTLPMGVVRPLTEVEMDHYREPFLNPVDREPLWRFPNELPIAGEPANIVALVEEYMDWLHQSPVPKLLFWGTPGVLIPPAEAARLAKSLPNCKAVDIGPGLNLLQEDNPDLIGSEIARWLSTL 293
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293


Chain B from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uy1 B   4 IGTGFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYVWRNIIPHVAPTHRCIAPDLIGMGKSDKPDLGYFFDDHVRFMDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAFMEFIRPIPTWDEWPEFARETFQAFRTTDVGRKLIIDQNVFIEGTLPMGVVRPLTEVEMDHYREPFLNPVDREPLWRFPNELPIAGEPANIVALVEEYMDWLHQSPVPKLLFWGTPGVLIPPAEAARLAKSLPNCKAVDIGPGLNLLQEDNPDLIGSEIARWLSTL 293
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UY1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UY1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UY1)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  5uy1
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  DHAA_RHORH | P0A3G2
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  3.8.1.5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHAA_RHORH | P0A3G2: 2v9z 3fbw 3rk4 3sk0 4e46 4f5z 4f60 4fwb 4wcv 5flk 5uxz 5vnp

(-) Related Entries Specified in the PDB File

5uxz