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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF HALOTAG BOUND TO THE P9 BENZOTHIADIAZOLE FLUOROGENIC LIGAND
 
Authors :  N. P. Dunham, A. K. Boal
Date :  23 Feb 17  (Deposition) - 08 Mar 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Haloalkane Dehalogenase, Fluorogenic, Halo, Tag, Solvatochromatic, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Liu, K. Miao, N. P. Dunham, H. Liu, M. Fares, A. K. Boal, X. Li, X. Zhang
The Cation-Pi Interaction Enables A Halo-Tag Fluorogenic Probe For Fast No-Wash Live Cell Imaging And Gel-Free Protein Quantification.
Biochemistry V. 56 1585 2017
PubMed-ID: 28221782  |  Reference-DOI: 10.1021/ACS.BIOCHEM.7B00056

(-) Compounds

Molecule 1 - HALOALKANE DEHALOGENASE
    Chains: A, B
    EC Number: 3.8.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Gene: DHAA
    Organism Scientific: RHODOCOCCUS RHODOCHROUS
    Organism Taxid: 1829

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
18PM2Ligand/IonN~2~-{[7-(DIMETHYLAMINO)-2,1,3-BENZOTHIADIAZOL-4-YL]SULFONYL}-N-HEXYL-N~2~-METHYLGLYCINAMIDE
2CL2Ligand/IonCHLORIDE ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
18PM1Ligand/IonN~2~-{[7-(DIMETHYLAMINO)-2,1,3-BENZOTHIADIAZOL-4-YL]SULFONYL}-N-HEXYL-N~2~-METHYLGLYCINAMIDE
2CL-1Ligand/IonCHLORIDE ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
18PM1Ligand/IonN~2~-{[7-(DIMETHYLAMINO)-2,1,3-BENZOTHIADIAZOL-4-YL]SULFONYL}-N-HEXYL-N~2~-METHYLGLYCINAMIDE
2CL-1Ligand/IonCHLORIDE ION
3EDO-1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:41 , ASP A:106 , TRP A:141 , PRO A:142 , ALA A:145 , PHE A:149 , THR A:172 , MET A:175 , GLY A:176 , VAL A:245 , LEU A:246 , ASN A:272 , CL A:402binding site for residue 8PM A 401
2AC2SOFTWAREASN A:41 , TRP A:107 , PRO A:206 , 8PM A:401binding site for residue CL A 402
3AC3SOFTWAREARG A:30 , ARG A:60 , LEU A:95binding site for residue EDO A 403
4AC4SOFTWAREGLY A:5 , THR A:6 , GLY A:7 , PRO A:9 , ARG A:49 , ASN A:50binding site for residue EDO A 404
5AC5SOFTWAREASN B:41 , TRP B:107 , PRO B:206 , 8PM B:401binding site for residue CL B 402
6AC6SOFTWAREGLY B:40 , ASN B:41 , HIS B:105 , TRP B:107 , GLY B:108 , SER B:109 , ALA B:110 , GLU B:130 , ILE B:132 , TRP B:141 , ALA B:145 , PHE B:149 , THR B:172 , MET B:175 , VAL B:245 , ASN B:272 , CL B:402binding site for Di-peptide 8PM B 401 and ASP B 106

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UXZ)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:41 -Pro A:42
2Glu A:214 -Pro A:215
3Thr A:242 -Pro A:243
4Asn B:41 -Pro B:42
5Glu B:214 -Pro B:215
6Thr B:242 -Pro B:243

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UXZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UXZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5UXZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee............hhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uxz A   4 IGTGFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYVWRNIIPHVAPTHRCIAPDLIGMGKSDKPDLGYFFDDHVRFMDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAFMEFIRPIPTWDEWPEFARETFQAFRTTDVGRKLIIDQNVFIEGTLPMGVVRPLTEVEMDHYREPFLNPVDREPLWRFPNELPIAGEPANIVALVEEYMDWLHQSPVPKLLFWGTPGVLIPPAEAARLAKSLPNCKAVDIGPGLNLLQEDNPDLIGSEIARWLSTL 294
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       294
                                                                                                                                                                                                                                                                                                                         291| 
                                                                                                                                                                                                                                                                                                                          293 


Chain B from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....eeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh...eeeeeeeee.....hhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhh...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uxz B   4 IGTGFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYVWRNIIPHVAPTHRCIAPDLIGMGKSDKPDLGYFFDDHVRFMDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAFMEFIRPIPTWDEWPEFARETFQAFRTTDVGRKLIIDQNVFIEGTLPMGVVRPLTEVEMDHYREPFLNPVDREPLWRFPNELPIAGEPANIVALVEEYMDWLHQSPVPKLLFWGTPGVLIPPAEAARLAKSLPNCKAVDIGPGLNLLQEDNPDLIGSEIARWLSTLEISGL 298
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UXZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UXZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UXZ)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  DHAA_RHORH | P0A3G2
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  3.8.1.5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHAA_RHORH | P0A3G2: 2v9z 3fbw 3rk4 3sk0 4e46 4f5z 4f60 4fwb 4wcv 5flk 5uy1 5vnp

(-) Related Entries Specified in the PDB File

5uy1