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(-) Description

Title :  CRYSTAL STRUCTURE OF BHGH81 MUTANT IN COMPLEX WITH LAMINARO-HEXAOSE
 
Authors :  B. Pluvinage, A. B. Boraston
Date :  29 Aug 16  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  (Alpha/Beta)6 Barrel, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Pluvinage, A. Hettle, A. Fillo, K. Abe, P. Massel, D. Langelaan, S. P. Smith, A. B. Boraston
The Quaternary Structure Of Beta-1, 3-Glucan Contributes To Its Recognition And Hydrolysis By A Multimodular Family 81 Glycoside Hydrolase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BH0236
    Mutation: YES
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 272558
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 33)

Asymmetric/Biological Unit (3, 33)
No.NameCountTypeFull Name
1BGC11Ligand/IonBETA-D-GLUCOSE
2EDO12Ligand/Ion1,2-ETHANEDIOL
3PO410Ligand/IonPHOSPHATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:313 , GLY A:335 , THR A:336 , GLU A:591 , HOH A:904 , HOH A:906 , HOH A:999binding site for residue EDO A 812
02AC2SOFTWAREASP A:155 , ASN A:157 , TYR A:160 , VAL A:269 , ARG A:270 , HOH A:903 , HOH A:1099binding site for residue EDO A 813
03AC3SOFTWAREGLN A:171 , GLU A:186 , GLU A:188binding site for residue EDO A 814
04AC4SOFTWAREVAL A:71 , ASP A:155 , TYR A:156 , HOH A:910 , HOH A:1011 , HOH A:1136binding site for residue EDO A 815
05AC5SOFTWAREGLN A:76 , TYR A:156 , ASN A:157 , ASP A:158 , TYR A:516 , HOH A:953 , HOH A:1336 , HOH A:1465binding site for residue EDO A 816
06AC6SOFTWAREARG A:103 , GLU A:105 , HOH A:972binding site for residue EDO A 817
07AC7SOFTWAREGLU A:121 , ASN A:122 , ARG A:123 , GLU A:124binding site for residue EDO A 818
08AC8SOFTWAREASP A:201 , VAL A:202 , TRP A:203 , LYS A:253binding site for residue EDO A 819
09AC9SOFTWAREGLU A:204 , MET A:205 , ASN A:206 , VAL A:588 , HIS A:589 , HIS A:641 , PO4 A:827binding site for residue EDO A 820
10AD1SOFTWAREALA A:274 , ASP A:275 , TRP A:276 , ARG A:509 , TYR A:516 , HOH A:1259binding site for residue EDO A 821
11AD2SOFTWAREASP A:275 , THR A:286 , THR A:288binding site for residue EDO A 822
12AD3SOFTWAREASP A:279 , THR A:282 , THR A:284binding site for residue EDO A 823
13AD4SOFTWAREHIS A:315 , SER A:579 , ASN A:582 , GLU A:583 , HIS A:589 , HOH A:951 , HOH A:996 , HOH A:1072binding site for residue PO4 A 824
14AD5SOFTWAREGLU A:280 , GLU A:559 , ARG A:567 , HIS A:732 , PRO A:733 , HOH A:992 , HOH A:1131 , HOH A:1146binding site for residue PO4 A 825
15AD6SOFTWAREASP A:201 , TRP A:203 , SER A:213 , HIS A:217 , HIS A:219 , LYS A:253 , HOH A:1040 , HOH A:1264binding site for residue PO4 A 826
16AD7SOFTWAREHIS A:641 , PRO A:642 , ASP A:643 , TYR A:644 , EDO A:820 , HOH A:960binding site for residue PO4 A 827
17AD8SOFTWAREHIS A:170 , ASP A:189 , HOH A:1022 , HOH A:1219binding site for residue PO4 A 828
18AD9SOFTWAREMET A:578 , ASN A:582 , HIS A:640 , HOH A:996 , HOH A:1072 , HOH A:1198 , HOH A:1280binding site for residue PO4 A 829
19AE1SOFTWAREARG A:368 , GLU A:685 , TYR A:712 , HIS A:716 , HOH A:947binding site for residue PO4 A 830
20AE2SOFTWAREGLU A:124 , GLU A:413 , ARG A:416 , ALA A:484binding site for residue PO4 A 831
21AE3SOFTWAREALA A:113 , PRO A:114 , HIS A:115 , HOH A:1102 , HOH A:1372 , HOH A:1379binding site for residue PO4 A 832
22AE4SOFTWAREHIS A:458 , BGC A:802 , BGC A:803 , HOH A:927 , HOH A:945 , HOH A:1025 , HOH A:1081 , HOH A:1347binding site for residue PO4 A 833
23AE5SOFTWARETYR A:387 , LYS A:391 , HIS A:458 , ARG A:463 , ASN A:465 , ASP A:466 , PHE A:469 , HIS A:470 , ALA A:529 , ASP A:530 , ASN A:540 , GLN A:542 , GLU A:546 , TRP A:615 , TRP A:664 , GLU A:699 , ARG A:704 , BGC A:809 , PO4 A:833 , HOH A:902 , HOH A:908 , HOH A:925 , HOH A:931 , HOH A:949 , HOH A:986 , HOH A:994 , HOH A:1025 , HOH A:1048 , HOH A:1052 , HOH A:1081 , HOH A:1105 , HOH A:1151 , HOH A:1195 , HOH A:1314 , HOH A:1347 , HOH A:1421binding site for Poly-Saccharide residues BGC A 801 through BGC A 806
24AE6SOFTWAREMET A:91 , TYR A:387 , LYS A:391 , TYR A:409 , HIS A:458 , ARG A:463 , ASN A:465 , ASP A:466 , PHE A:469 , HIS A:470 , ALA A:529 , ASP A:530 , PHE A:535 , ASP A:536 , ALA A:537 , ASN A:540 , GLN A:542 , GLU A:546 , ILE A:604 , TRP A:606 , LYS A:609 , ASP A:611 , THR A:614 , TRP A:615 , TRP A:616 , ASN A:617 , TRP A:664 , GLU A:699 , ARG A:704 , BGC A:801 , PO4 A:833 , HOH A:902 , HOH A:908 , HOH A:919 , HOH A:925 , HOH A:931 , HOH A:949 , HOH A:984 , HOH A:986 , HOH A:994 , HOH A:1025 , HOH A:1048 , HOH A:1052 , HOH A:1055 , HOH A:1081 , HOH A:1091 , HOH A:1104 , HOH A:1122 , HOH A:1151 , HOH A:1195 , HOH A:1196 , HOH A:1314 , HOH A:1387 , HOH A:1421binding site for Poly-Saccharide residues BGC A 807 through BGC A 811

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T4C)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1His A:96 -Pro A:97
2Gly A:339 -Leu A:340
3Tyr A:454 -His A:455
4Leu A:629 -Pro A:630

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T4C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T4C)

(-) Exons   (0, 0)

(no "Exon" information available for 5T4C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:752
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee............hhhhhhhh.......................hhhhhh...........eeeee..eeeee..hhhhheeeee....eeeee......eeeee.......eeeeeee...eeeeeeee..eeeeeeee....eeeeeee...eeee.....eeeee...eeeee.....eeeee.............eeee...eeeeee....hhhhhhhhhhhh.eeeeeeeeeeee.....eeeeeeeeeeee........ee...hhhhhhhhhhhhhhhh....eeee..eeee..ee.eeeeeee..............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.............eeeee....eeeee...........hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh................................ee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..................eee..eeee........hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhee..........eeeeee..eeeeeeee.....eeee.....eeee...ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t4c A  27 MHAVSVGKGSYATEFPEIDFGGINDPGFRDQQGEPPATIYRSDRVTGPMQTNSWWGSLAVDRFSMNQYPHPFSVRHRAEGLHVFYDAPHNMVVHENREAGTWHIHGAIGTDFTIKHSGTANFEQAVVDDYNDWYVRGLLENGAHQMAITYGVGSPYIFVEYEDGSAVLDFDIAPDVWEMNGHVIGFSTHDHKHYAAFAPPGQNWSGIGSKTLTNNADYIAIAKLPEKDGNMLAKFEQYAYSVVRDAVADWTYDEATGTVTTTFEVTTEAKVQGAPDGTIFALYPHQYRHLASSSENQLLQNYQYEIIRGTMIGLEGKRFTTELTYPGVLPSLPDLGDYDRERLIGYLHDATSDYPTGSDTYELGKYIGKLATLAPIADQMGEYELAEQFRGELKDILEDWLQATNASGQLKGKNLFYYNENWGTILGYHAAHSSATRINDHHFHYGYFVKAAAEIARADQEWAKSENWGGMIDLLIRDFMADRDDDLFPYLRMFDPYSGNSWADGLATFDAGNNQQSSSEAMHAWTNVILWAEATGNKALRDRAIYLYTTEMSAINEYFFDVHQEIFPEEYGPEIVTINWGGKMDHATWWNSGKVEKYAINWLPFHGGSLYLGHHPDYVDRAYEELRRDIGSTDWNLWSNLVWMYRAFTNPDDALQQMEASIDDYGLFDPGNEKIIERGSTKAQTYHWIHNLAELGRVDPTVTANHPIYAVFNKNGNRTYIVYNFSDSPITVQFSDGHSIQVEPHSFNIGNG 778
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T4C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T4C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T4C)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  5t4c
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  Q9KG76_BACHD | Q9KG76
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9KG76_BACHD | Q9KG76: 5t49 5t4a 5t4g 5upi 5upm 5upn 5upo 5v1w
UniProtKB/TrEMBL
        Q9KG76_BACHD | Q9KG76: 1w9s 1w9t 1w9w

(-) Related Entries Specified in the PDB File

5t49 5t4a 5t4g