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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MYC3 N-TERMINAL DOMAIN [44-242] IN COMPLEX WITH JAZ10 CMID DOMAIN [16-58] FROM ARABIDOPSIS
 
Authors :  J. Ke, F. Zhang, J. S. Brunzelle, S. Y. He, H. E. Xu, K. Melcher
Date :  16 Aug 16  (Deposition) - 25 Jan 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcriptional Repression, Jasmonate Signaling, Myc3, Jaz10 Cmid, Alternative Splicing, Desensitization, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Zhang, J. Ke, L. Zhang, R. Chen, K. Sugimoto, G. A. Howe, H. E. Xu, M. Zhou, S. Y. He, K. Melcher
Structural Insights Into Alternative Splicing-Mediated Desensitization Of Jasmonate Signaling.
Proc. Natl. Acad. Sci. V. 114 1720 2017 U. S. A.
PubMed-ID: 28137867  |  Reference-DOI: 10.1073/PNAS.1616938114

(-) Compounds

Molecule 1 - TRANSCRIPTION FACTOR MYC3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MYC3, ATR2, BHLH5, EN36, AT5G46760, MZA15.18
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: BASIC HELIX-LOOP-HELIX PROTEIN 5,BHLH 5,PROTEIN ALTERED TRYPTOPHAN REGULATION 2,TRANSCRIPTION FACTOR ATR2,TRANSCRIPTION FACTOR EN 36,BHLH TRANSCRIPTION FACTOR BHLH005
 
Molecule 2 - PROTEIN TIFY 9
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 16-58
    Gene: TIFY9, JAS1, JAZ10, AT5G13220, T31B5.40
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: JASMONATE ZIM DOMAIN-CONTAINING PROTEIN 10,PROTEIN JASMONATE-ASSOCIATED 1,PROTEIN JAZ10

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5T0F)

(-) Sites  (0, 0)

(no "Site" information available for 5T0F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T0F)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu B:30 -Asp B:31

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T0F)

(-) Exons   (0, 0)

(no "Exon" information available for 5T0F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.ee..hhhhhhhhhh...eeeehhhhhhhh.hhhhhhhhhh...eeeeee...eeeeeee......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t0f A  51 TLQQRLQALIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGETNTAEQEHRKRVIRELNSLISDEEVTDTEWFFLVSMTQSFVNGVGLPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNLFN 236
                                    60        70        80        90       100|      119       129||     149       159       169       179       189       199       209       219       229       
                                                                           100|                 130|                                                                                               
                                                                            110                  141                                                                                               


Chain B from PDB  Type:PROTEIN  Length:32
                                                                
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                 5t0f B  26 FQKFLDRRRSFRDIQGAISKIDPEIIKSLLAS  57
                                    35        45        55
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T0F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T0F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T0F)

(-) Gene Ontology  (20, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu B:30 - Asp B:31   [ RasMol ]  
 

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  5t0f
    Family and Domain Information: ProDom | SYSTERS
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYC3_ARATH | Q9FIP9: 4rqw 4rru 4rs9 4ywc 4yz6 5t0q
        TIF9_ARATH | Q93ZM9: 5t0q

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5T0F)