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(-) Description

Title :  MYC3 N-TERMINAL JAZ-BINDING DOMAIN[5-242] FROM ARABIDOPSIS
 
Authors :  J. Ke, F. Zhang, X. E. Zhou, J. S. Brunzelle, M. Zhou, H. E. Xu, K. Melcher,
Date :  06 Nov 14  (Deposition) - 12 Aug 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Helix-Sheet-Helix Fold, Transcription Factor, Jaz Repressors, Nuclear, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Zhang, J. Yao, J. Ke, L. Zhang, V. Q. Lam, X. F. Xin, X. E. Zhou, J. Chen, J. Brunzelle, P. R. Griffin, M. Zhou, H. E. Xu, K. Melcher, S. Y. He
Structural Basis Of Jaz Repression Of Myc Transcription Factors In Jasmonate Signalling.
Nature V. 525 269 2015
PubMed-ID: 26258305  |  Reference-DOI: 10.1038/NATURE14661

(-) Compounds

Molecule 1 - TRANSCRIPTION FACTOR MYC3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSUMO
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: MYC3 N-TERMINAL JAZ-BINDING DOMAIN (UNP RESIDUES 5-242)
    Gene: AT5G46760, ATR2, BHLH5, EN36, MYC3, MYC3 TRANSCRIPTION FACTOR, MZA15.18
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: BASIC HELIX-LOOP-HELIX PROTEIN 5, ATBHLH5, BHLH 5, PROTEIN ALTERED TRYPTOPHAN REGULATION 2, TRANSCRIPTION FACTOR ATR2, TRANSCRIPTION FACTOR EN 36, BHLH TRANSCRIPTION FACTOR BHLH005

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:13 , GLY A:93BINDING SITE FOR RESIDUE CA A 301
2AC2SOFTWAREGLU A:116 , GLY A:188BINDING SITE FOR RESIDUE CA A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RRU)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asp A:50 -Thr A:51
2Gly A:84 -Asp A:85
3Ser A:130 -Gly A:131

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RRU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RRU)

(-) Exons   (0, 0)

(no "Exon" information available for 4RRU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....hhhhhhhhhhh..hhhhhhhhhhhh......eeeeeeeeeee......eeeeeeeeeeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhh..eee..hhhhhhhhhh..eeeeehhhhhhh..hhhhhhhhhh...eeeeee...eeeeeee......hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rru A   6 SSINFLTSDDDASAAAMEAFIEDTLQQRLQALIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEAEQEHRKRVIRELNSLISGDEEVTDTEWFFLVSMTQSFVNGVGLPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNLFNF 237
                                    15        25||      57        67        77        87        97  ||   119       129 ||    148       158       168       178       188       198       208       218       228         
                                               26|                                                100|               131|                                                                                                
                                                49                                                 113                141
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RRU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RRU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RRU)

(-) Gene Ontology  (12, 12)

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  4rru
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYC3_ARATH | Q9FIP9: 4rqw 4rs9 4ywc 4yz6 5t0f 5t0q

(-) Related Entries Specified in the PDB File

4rqw MYC3 N-TERMINAL JAZ-BINDING DOMAIN [44-238]