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(-) Description

Title :  EPSTEIN-BARR VIRUS ZTA DNA BINDING DOMAIN HOMODIMER IN COMPLEX WITH METHYLATED DNA
 
Authors :  S. Hong, J. R. Horton, X. Cheng
Date :  15 Aug 16  (Deposition) - 01 Mar 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Zta, Zebra, Bzlf-1, Ap-1, Epstein-Barr Virus, Ebv, 5-Methylcytosine, 5Mc, Dna Methylation, Transcription Factor, Basic Leucine-Zipper, Bzip, Transcription Regulator-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hong, D. Wang, J. R. Horton, X. Zhang, S. H. Speck, R. M. Blumenthal, X. Cheng
Methyl-Dependent And Spatial-Specific Dna Recognition By Th Orthologous Transcription Factors Human Ap-1 And Epstein-Barr Virus Zta.
Nucleic Acids Res. V. 45 2503 2017
PubMed-ID: 28158710  |  Reference-DOI: 10.1093/NAR/GKX057

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*CP*TP*TP*CP*AP*TP*(5CM) P*GP*CP*TP*CP*AP*GP*TP*GP*CP*T)-3')
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*GP*(5CM) P*GP*AP*TP*GP*AP*AP*G)-3')
    Chains: D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - ZTA TRANSCRIPTION FACTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: DNA BINDING DOMAIN (UNP RESIDUES 175-236)
    Mutation: YES
    Organism Common: HHV-4, HUMAN HERPESVIRUS 4
    Organism Scientific: EPSTEIN-BARR VIRUS
    Organism Taxid: 10376
    Synonym: EB1,ZEBRA

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:180 , ARG A:183 , ARG A:187 , ARG B:190 , ALA B:191 , LYS B:194 , DA D:110binding site for residue PO4 A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SZX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro B:235 -Asp B:236

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SZX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SZX)

(-) Exons   (0, 0)

(no "Exon" information available for 5SZX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 5szx A 175 LEIKRYKNRVASRKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLDVDSIIPRTPD 236
                                   184       194       204       214       224       234  


Chain B from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 5szx B 175 LEIKRYKNRVASRKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLDVDSIIPRTPD 236
                                   184       194       204       214       224       234  


Chain C from PDB  Type:DNA  Length:18
                                                  
                 5szx C   1 TCTTCATxGCTCAGTGCT  18
                                   |10        
                                   8-5CM      


Chain D from PDB  Type:DNA  Length:18
                                                  
                 5szx D 102 AAGCACTGAGxGATGAAG 119
                                   111|       
                                    112-5CM
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SZX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SZX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5SZX)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  BZLF1_EBVB9 | P03206
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BZLF1_EBVB9 | P03206: 1zsd 2ak4 2axf 2axg 2c9l 2c9n 2nx5 3kww 3kxf 3spv 3vfn 3vfo 3vfp 3vfr

(-) Related Entries Specified in the PDB File

5t01