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(-) Description

Title :  HUMAN C-JUN DNA BINDING DOMAIN HOMODIMER IN COMPLEX WITH METHYLATED DNA
 
Authors :  S. Hong, J. R. Horton, X. Cheng
Date :  15 Aug 16  (Deposition) - 01 Mar 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Zta, Zebra, Bzlf-1, Ap-1, Epstein-Barr Virus, Ebv, 5-Methylcytosine, 5Mc, Dna Methylation, Transcription Factor, Basic Leucine-Zipper, Bzip, Transcription Regulator-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Hong, D. Wang, J. R. Horton, X. Zhang, S. H. Speck, R. M. Blumenthal, X. Cheng
Methyl-Dependent And Spatial-Specific Dna Recognition By Th Orthologous Transcription Factors Human Ap-1 And Epstein-Barr Virus Zta.
Nucleic Acids Res. V. 45 2503 2017
PubMed-ID: 28158710  |  Reference-DOI: 10.1093/NAR/GKX057

(-) Compounds

Molecule 1 - DNA (5'- D(P*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*GP*TP*CP*CP*AP*T)-3')
    ChainsC
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES
 
Molecule 2 - DNA (5'-D(*AP*AP*TP*GP*GP*AP*(5CM) P*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*G)-3')
    ChainsD
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES
 
Molecule 3 - TRANSCRIPTION FACTOR AP-1
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentDNA BINDING DOMAIN (UNP RESIDUES 254-315)
    GeneJUN
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymACTIVATOR PROTEIN 1,AP1,PROTO-ONCOGENE C-JUN,V-JUN AVIAN SARCOMA VIRUS 17 ONCOGENE HOMOLOG,P39

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
15CM1Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 5T01)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T01)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T01)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T01)

(-) Exons   (0, 0)

(no "Exon" information available for 5T01)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 5t01 A 252 HMKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 313
                                   261       271       281       291       301       311  

Chain B from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 5t01 B 252 HMKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 313
                                   261       271       281       291       301       311  

Chain C from PDB  Type:DNA  Length:18
                                                  
                 5t01 C   1 CTCCTATGACTCGTCCAT  18
                                    10        

Chain D from PDB  Type:DNA  Length:19
                                                   
                 5t01 D  23 AATGGAxGAGTCATAGGAG  41
                                  | 32         
                                 29-5CM        

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T01)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T01)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T01)

(-) Gene Ontology  (98, 98)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JUN_HUMAN | P054121a02 1fos 1jnm 1jun 1s9k 1t2k

(-) Related Entries Specified in the PDB File

5szx