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(-) Description

Title :  STRUCTURE OF A C-TERMINAL DOMAIN OF A REPTARENAVIRUS L PROTEIN WITH M7GTP
 
Authors :  M. Rosenthal, N. Gogrefe, J. Reguera, D. Vogel, B. Rauschenberger, S. C S. Gunther, S. Reindl
Date :  14 Jan 17  (Deposition) - 17 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Arenavirus, Polymerase, Putative Cap-Binding, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Rosenthal, N. Gogrefe, D. Vogel, J. Reguera, B. Rauschenberger, S. Cusack, S. Gunther, S. Reindl
Structural Insights Into Reptarenavirus Cap-Snatching Machinery.
Plos Pathog. V. 13 06400 2017
PubMed-ID: 28505175  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006400

(-) Compounds

Molecule 1 - L PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINUS, UNP RESIDUES 1721-2046
    Organism Scientific: CAS VIRUS
    Organism Taxid: 1223561

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MGT1Ligand/Ion7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1813 , PHE A:1839 , VAL A:1840 , GLU A:1841 , GLY A:1842 , HIS B:1896 , HIS B:1923 , ASN B:1924 , ASP B:1928 , LYS B:1932 , LEU B:1967 , ARG B:1968 , LYS B:1999 , HOH B:2227 , HOH B:2234binding site for residue MGT B 2101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MUY)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Pro A:2 -Thr A:1721
2Lys A:1828 -Pro A:1829
3Ile A:1910 -Gly A:1911
4Lys B:1828 -Pro B:1829

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MUY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MUY)

(-) Exons   (0, 0)

(no "Exon" information available for 5MUY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhh....hhhhhh....hhhhhhhhhhhh...............eeeeeeeeee.........eeeeeeeee......eeeeeeee....eeeeeeeeee...hhhhhhhhhhhhhhhhh.hhhhhhh.hhhhheeeee.......eeee..eeee......ee......hhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.eee....eeeee...eeeee.....eee..eeeee....hhhhhhhhee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5muy A    2 PTAVQELNRICDGMILSSILRPQMVEPSLIGDVLKTEPFTSSLEVLKDIKVSGLMRYIKQVLLGRKSYYKFGEEHADGDQNLFDYQFTGTPEEPIKGYWTTTISYRDSKPKISLTIRQEFVEGGVESQAVLATVVGRPHLQDFLLLKRKHLEYSDYPESIDLIEFGDVKVIEKTVGHGQPVVLYMASLFPIGLTKIAEQGIGCHNEKNDATLKSLLKTAILNMTPDDVSLLPRSKLDAIDHVVRNVYLRFNNSSAVSYGLHKLQSFEKILQLNGRIYETKESTLVFHHKKGVLVEDLKGLMSYKTLRVSEWREKQEPEEARVEVLEE 2046
                            ||    1729      1739      1749      1759      1769      1779      1789      1799      1809      1819      1829      1839      1849      1859      1869      1879      1889      1899      1909      1919      1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039       
                            ||                                                                                                                                                                                                                                                                                                                                     
                            2|                                                                                                                                                                                                                                                                                                                                     
                          1721                                                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhh....hhhhhh....hhhhhhhhhhhh......ee.......eeeeeeeeee..........eeeeeeee......eeeeeeeee..eeeeeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhh.hhhhheeeee.....eeeeee..eeee......ee......hhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.eee....eeeee...eeeee.....eee..eeeee....hhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5muy B    2 PTAVQELNRICDGMILSSILRPQMVEPSLIGDVLKTEPFTSSLEVLKDIKVSGLMRYIKQVLLGRKSYYKFGEEHADGDQNLFDYQFTGTPEEPIKGYWTTTISYRDSKPKISLTIRQEFVEGGVESQAVLATVVGRPHLQDFLLLKRKHLEYSDYPESIDLIEFGDVKVIEKTVGHGQPVVLYMASLFPIGLTKIAEQGIGCHNEKNDATLKSLLKTAILNMTPDDVSLLPRSKLDAIDHVVRNVYLRFNNSSAVSYGLHKLQSFEKILQLNGRIYETKESTLVFHHKKGVLVEDLKGLMSYKTLRVSEWREKQEPEEARVEVLEE 2046
                            ||    1729      1739      1749      1759      1769      1779      1789      1799      1809      1819      1829      1839      1849      1859      1869      1879      1889      1899      1909      1919      1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039       
                            2|                                                                                                                                                                                                                                                                                                                                     
                          1721
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MUY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MUY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MUY)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        J7HBG8_9VIRU | J7HBG8: 5mus 5muz 5mv0

(-) Related Entries Specified in the PDB File

5mus 5MUS CONTAINS THE SAME PROTEIN WITHOUT M7GTP