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(-) Description

Title :  STRUCTURE OF AN N-TERMINAL DOMAIN OF A REPTARENAVIRUS L PROTEIN
 
Authors :  M. Rosenthal, N. Gogrefe, J. Reguera, D. Vogel, B. Rauschenberger, S. C S. Gunther, S. Reindl
Date :  14 Jan 17  (Deposition) - 17 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),B (1x),C (1x),D (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Arenavirus, Polymerase, Endonuclease, Cap-Snatching, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Rosenthal, N. Gogrefe, D. Vogel, J. Reguera, B. Rauschenberger, S. Cusack, S. Gunther, S. Reindl
Structural Insights Into Reptarenavirus Cap-Snatching Machinery.
Plos Pathog. V. 13 06400 2017
PubMed-ID: 28505175  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006400

(-) Compounds

Molecule 1 - L PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINUS, UNP RESIDUES 1-205
    Organism Scientific: CAS VIRUS
    Organism Taxid: 1223561

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A (1x)B (1x)C (1x)D (1x)
Biological Unit 2 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:65 , ASN A:67 , HIS A:82 , HOH A:417 , HOH A:481 , LYS C:114 , SER C:117 , HOH C:461binding site for residue PO4 A 301
2AC2SOFTWARESER B:65 , ASN B:67 , MET B:68 , HIS B:82 , HOH B:430 , HOH B:431 , HOH B:482 , LYS D:114 , SER D:117binding site for residue PO4 B 301
3AC3SOFTWAREARG A:113 , LYS A:114 , SER A:117 , SER C:65 , ASN C:67 , HIS C:82 , HOH C:418 , HOH C:425 , HOH C:482binding site for residue PO4 C 301
4AC4SOFTWARELYS B:114 , SER B:117 , SER D:65 , ASN D:67 , MET D:68 , HIS D:82 , HOH D:403 , HOH D:429 , HOH D:447 , HOH D:456binding site for residue PO4 D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MV0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MV0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MV0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MV0)

(-) Exons   (0, 0)

(no "Exon" information available for 5MV0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.ee.....hhhhhhhhhh............eeeee....eeeeeeeee..hhhhhhhhhhhhhhh..hhhhhhhhh..eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mv0 A   0 PMDPDTNLLKNVILEILSIEPDLYKQSSIVDDPYKLAMSAIRLRATIHELNCCRDLGIIHNTKEISLNMVIDRAIPIHPTFQHIVPDGYTIDRANMTIIVLEASTRSMPSDQKRKITSDKLKYSGVEDHLKHEGWLFNIIVISETKPRNGNVPERLLFELLKLSLSILSYSDKSSQWISEEEYDELKRSLTTYDFKTLTS 199
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199


Chain B from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.ee.....hhhhhhhh..............eeeee....eeeeeeeee..hhhhhhhhhhhhhhh..hhhhhhhhh..eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mv0 B   0 PMDPDTNLLKNVILEILSIEPDLYKQSSIVDDPYKLAMSAIRLRATIHELNCCRDLGIIHNTKEISLNMVIDRAIPIHPTFQHIVPDGYTIDRANMTIIVLEASTRSMPSDQKRKITSDKLKYSGVEDHLKHEGWLFNIIVISETKPRNGNVPERLLFELLKLSLSILSYSDKSSQWISEEEYDELKRSLTTYDFKTLTSEFSGTK 205
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199      


Chain C from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.ee.....hhhhhhhhhh............eeeee....eeeeeeeee..hhhhhhhhhhhhhhh..hhhhhhhhh..eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mv0 C   1 MDPDTNLLKNVILEILSIEPDLYKQSSIVDDPYKLAMSAIRLRATIHELNCCRDLGIIHNTKEISLNMVIDRAIPIHPTFQHIVPDGYTIDRANMTIIVLEASTRSMPSDQKRKITSDKLKYSGVEDHLKHEGWLFNIIVISETKPRNGNVPERLLFELLKLSLSILSYSDKSSQWISEEEYDELKRSLTTYD 193
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain D from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.ee.....hhhhhhhh..............eeeee....eeeeeeeee..hhhhhhhhhhhhhhh..hhhhhhhhh..eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mv0 D   1 MDPDTNLLKNVILEILSIEPDLYKQSSIVDDPYKLAMSAIRLRATIHELNCCRDLGIIHNTKEISLNMVIDRAIPIHPTFQHIVPDGYTIDRANMTIIVLEASTRSMPSDQKRKITSDKLKYSGVEDHLKHEGWLFNIIVISETKPRNGNVPERLLFELLKLSLSILSYSDKSSQWISEEEYDELKRSLTTYDFKTL 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MV0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MV0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MV0)

(-) Gene Ontology  (7, 7)

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        J7HBG8_9VIRU | J7HBG8: 5mus 5muy 5muz

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