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(-) Description

Title :  STRUCTURE OF THE C-TERMINAL DOMAIN OF A REPTARENAVIRUS L PROTEIN
 
Authors :  M. Rosenthal, N. Gogrefe, J. Reguera, D. Vogel, B. Rauschenberger, S. C S. Gunther, S. Reindl
Date :  14 Jan 17  (Deposition) - 17 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Arenavirus, Polymerase, Putative Cap-Binding, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Rosenthal, N. Gogrefe, D. Vogel, J. Reguera, B. Rauschenberger, S. Cusack, S. Gunther, S. Reindl
Structural Insights Into Reptarenavirus Cap-Snatching Machinery.
Plos Pathog. V. 13 06400 2017
PubMed-ID: 28505175  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006400

(-) Compounds

Molecule 1 - L PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CAS VIRUS
    Organism Taxid: 1223561

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
3MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:1773 , MSE A:1774 , GLN A:1918 , GLY A:1919 , HOH A:2233 , ASP B:1874binding site for residue GOL A 2101
2AC2SOFTWAREHIS A:1858 , LEU A:1859 , PHE A:1884 , SER A:1933 , LYS A:1936 , LEU A:1940 , HOH A:2220 , HOH A:2329binding site for residue GOL A 2102
3AC3SOFTWAREARG A:2031 , HIS B:1980 , GLU B:1986 , LEU B:1989 , HIS B:2007 , HOH B:2218 , HOH B:2271binding site for residue GOL B 2101
4AC4SOFTWARELEU A:2044 , GLU A:2045 , HIS B:2006 , LYS B:2008binding site for residue CL B 2102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MUS)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Lys A:1828 -Pro A:1829
2Glu A:1841 -Gly A:1842
3Lys B:1828 -Pro B:1829

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MUS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MUS)

(-) Exons   (0, 0)

(no "Exon" information available for 5MUS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhhh...............eeeeeeeeee.........eeeeeeeee......eeeeeeeee..eeeeeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhh.hhhhheeeee.......eeee..eeee......ee......hhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.eee....eeeee...eeeee.....eee..eeeee....hhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5mus A    2 PTAVQELNRICDGmILSSILRPQmVEPSLIGDVLKTEPFTSSLEVLKDIKVSGLmRYIKQVLLGRKSYYKFGEEHADGDQNLFDYQFTGTPEEPIKGYWTTTISYRDSKPKISLTIRQEFVEGGVESQAVLATVVGRPHLQDFLLLKRKHLEYSDYPESIDLIEFGDVKVIEKTVGHGQPVVLYmASLFPIGLTKIAEQGIGCHNEKNDATLKSLLKTAILNmTPDDVSLLPRSKLDAIDHVVRNVYLRFNNSSAVSYGLHKLQSFEKILQLNGRIYETKESTLVFHHKKGVLVEDLKGLmSYKTLRVSEWREKQEPEEARVEVLEE 2046
                            ||    1729   |  1739   |  1749      1759      1769    | 1779      1789      1799      1809      1819      1829      1839      1849      1859      1869      1879      1889      1899    | 1909      1919      1929      1939  |   1949      1959      1969      1979      1989      1999      2009      2019|     2029      2039       
                            ||        1733-MSE  1743-MSE                       1774-MSE                                                                                                                          1904-MSE                              1942-MSE                                                                      2020-MSE                      
                            2|                                                                                                                                                                                                                                                                                                                                     
                          1721                                                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhh....hhhhhh....hhhhhhhhhhhh...............eeeeeeeeee..........eeeeeeee......eeeeeeeee..eeeeeeeeeee...hhhhhhhhhhhhhhhhhh.hhhhhh.hhh.eeeeee.......eeee..eeee......ee......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.eee....eeeee...eeeee.....eee..eeeee....hhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5mus B    1 GPTAVQELNRICDGmILSSILRPQmVEPSLIGDVLKTEPFTSSLEVLKDIKVSGLmRYIKQVLLGRKSYYKFGEEHADGDQNLFDYQFTGTPEEPIKGYWTTTISYRDSKPKISLTIRQEFVEGGVESQAVLATVVGRPHLQDFLLLKRKHLEYSDYPESIDLIEFGDVKVIEKTVGHGQPVVLYmASLFPIGLTKIAEQGIGCHNEKNDATLKSLLKTAILNmTPDDVSLLPRSKLDAIDHVVRNVYLRFNNSSAVSYGLHKLQSFEKILQLNGRIYETKESTLVFHHKKGVLVEDLKGLmSYKTLRVSEWREKQEPEEARVEVLEE 2046
                             ||   1728    | 1738    | 1748      1758      1768     |1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898     |1908      1918      1928      1938   |  1948      1958      1968      1978      1988      1998      2008      2018 |    2028      2038        
                             2|        1733-MSE  1743-MSE                       1774-MSE                                                                                                                          1904-MSE                              1942-MSE                                                                      2020-MSE                      
                           1721
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MUS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MUS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MUS)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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        J7HBG8_9VIRU | J7HBG8: 5muy 5muz 5mv0

(-) Related Entries Specified in the PDB File

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