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(-) Description

Title :  AURORA-A KINASE DOMAIN IN COMPLEX WITH VNAR-D01 (CRYSTAL FORM 2)
 
Authors :  S. G. Burgess, R. Bayliss
Date :  08 Jun 16  (Deposition) - 20 Jul 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase, Vnar, Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Burgess, A. Oleksy, T. Cavazza, M. W. Richards, I. Vernos, D. Matthews, R. Bayliss
Allosteric Inhibition Of Aurora-A Kinase By A Synthetic Vna Domain.
Open Biology V. 6 2016
PubMed-ID: 27411893  |  Reference-DOI: 10.1098/RSOB.160089

(-) Compounds

Molecule 1 - AURORA KINASE A
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET30TEV
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Gene: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AURORA 2,AURORA/IPL1-RELATED KINASE 1,HARK1,BREAST TUMOR- AMPLIFIED KINASE,SERINE/THREONINE-PROTEIN KINASE 15,SERINE/THREONINE- PROTEIN KINASE 6,SERINE/THREONINE-PROTEIN KINASE AURORA-A
 
Molecule 2 - NEW ANTIGEN RECEPTOR VARIABLE DOMAIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET26B(+)
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Organism Common: SPOTTED WOBBEGONG
    Organism Scientific: ORECTOLOBUS MACULATUS
    Organism Taxid: 168098

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO10Ligand/Ion1,2-ETHANEDIOL
3SO42Ligand/IonSULFATE ION
4TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:140 , GLY A:142 , LYS A:143 , VAL A:147 , ALA A:160 , LYS A:162 , LEU A:194 , GLU A:211 , ALA A:213 , LEU A:263 , HOH A:624 , HOH A:632 , HOH A:651 , HOH A:687 , HOH A:719 , HOH A:722binding site for residue ADP A 501
02AC2SOFTWAREHIS A:248 , MET A:373 , LEU A:374 , HOH A:605 , HOH A:629binding site for residue SO4 A 502
03AC3SOFTWARELYS A:153 , PRO A:349 , ASP A:350 , PHE A:351 , HOH A:627 , HOH A:640binding site for residue EDO A 503
04AC4SOFTWARETYR A:246 , LYS A:250 , HOH B:333binding site for residue EDO A 504
05AC5SOFTWARESER A:266 , LYS A:339 , ARG A:343 , HOH A:608binding site for residue EDO A 505
06AC6SOFTWAREGLN A:127 , HOH A:634binding site for residue EDO A 506
07AC7SOFTWAREVAL A:163binding site for residue EDO A 507
08AC8SOFTWAREHIS A:187 , GLU B:47 , LYS B:85binding site for residue EDO A 508
09AC9SOFTWAREARG A:251 , ARG B:55 , TYR B:56binding site for residue EDO A 509
10AD1SOFTWAREARG A:232 , THR A:235 , SER A:388binding site for residue EDO A 510
11AD2SOFTWAREARG A:255 , SER A:278 , VAL A:279 , SER A:283 , HIS A:306binding site for residue EDO A 511
12AD3SOFTWAREARG A:126 , GLN A:127 , HOH A:615binding site for residue EDO A 512
13AD4SOFTWAREMET B:1 , ALA B:2 , HOH B:307 , HOH B:328binding site for residue SO4 B 201

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1B:23 -B:84
2B:30 -B:90

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:278 -Val A:279
2Ala A:281 -Pro A:282
3Thr B:7 -Pro B:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L8K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L8K)

(-) Exons   (0, 0)

(no "Exon" information available for 5L8K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeeee..eeeeeeee.....eeeeeeeehhhhhhh.hhhhhhhhhhhhh.........eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...ee...hhh.eee.....eee....ee..................hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l8k A 126 RQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTtLAGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKPSN 392
                                   135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285  |    295       305       315       325       335       345       355       365       375       385       
                                                                                                                                                                                            288-TPO                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeee....eeeeeeee.........eeeeee.....eee......eeeeeehhh.eeeeee...hhhh.eeeeeeee.....eee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 5l8k B   1 MARVDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAIDSCWLSREGAGTVLTVKG 105
                                    10        20        30        40        50        60        70        80        90       100
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L8K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L8K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L8K)

(-) Gene Ontology  (70, 70)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:281 - Pro A:282   [ RasMol ]  
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  Q8JJ25_9CHON | Q8JJ25
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AURKA_HUMAN | O14965: 1mq4 1muo 1ol5 1ol6 1ol7 2bmc 2c6d 2c6e 2dwb 2j4z 2j50 2np8 2w1c 2w1d 2w1e 2w1f 2w1g 2wqe 2wtv 2wtw 2x6d 2x6e 2x81 2xne 2xng 2xru 3coh 3e5a 3efw 3fdn 3h0y 3h0z 3h10 3ha6 3k5u 3lau 3m11 3myg 3nrm 3o50 3o51 3p9j 3qbn 3r21 3r22 3unz 3uo4 3uo5 3uo6 3uod 3uoh 3uoj 3uok 3uol 3up2 3up7 3vap 3w10 3w16 3w18 3w2c 4b0g 4bn1 4byi 4byj 4c3p 4c3r 4ceg 4dea 4deb 4ded 4dee 4dhf 4j8m 4j8n 4jai 4jaj 4jbo 4jbp 4jbq 4o0s 4o0u 4o0w 4prj 4utd 4uyn 4uzd 4uzh 4zs0 4ztq 4ztr 4zts 5aad 5aae 5aaf 5aag 5dn3 5dnr 5dos 5dpv 5dr2 5dr6 5dr9 5drd 5dt0 5dt3 5dt4 5ew9 5g1x 5l8j 5l8l 5lxm
UniProtKB/TrEMBL
        Q8JJ25_9CHON | Q8JJ25: 2coq 5l8j 5l8l

(-) Related Entries Specified in the PDB File

5l8l DIFFERENT SPACE GROUP OF THE SAME PROTEIN-PROTEIN COMPLEX