Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  SAR156497 AN EXQUISITELY SELECTIVE INHIBITOR OF AURORA KINASES
 
Authors :  J. C. Carry, F. Clerc, H. Minoux, L. Schio, J. Mauger, A. Nair, E. Parmant R. Lemoigne, C. Delorme, J. P. Nicolas, A. Krick, P. Y. Abecassis, V. Crocq-Stuerga, S. Pouzieux, L. Delarbre, S. Maignan, T. Bertrand, K. Bjergarde, N. Ma, S. Lachaud, H. Guizani, R. Lebel, G. Doerflinger, S. Perron, F. Gasse, O. Angouillant-Boniface, B. Filoche-Romme, M. M S. Gontier, C. Prevost, M. L. Monteiro, C. Combeau
Date :  02 Sep 14  (Deposition) - 19 Nov 14  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Carry, F. Clerc, H. Minoux, L. Schio, J. Mauger, A. Nair, E. Parmantier, R. Le Moigne, C. Delorme, J. Nicolas, A. Krick, P. Abecassis, V. Crocq-Stuerga, S. Pouzieux, L. Delarbre, S. Maignan T. Bertrand, K. Bjergarde, N. Ma, S. Lachaud, H. Guizani, R. Lebel, G. Doerflinger, S. Monget, S. Perron, F. Gasse, O. Angouillant-Boniface, B. Filoche-Romme, M. Murer, S. Gontier, C. Prevost, M. Monteiro, C. Combeau
Sar156497, An Exquisitely Selective Inhibitor Of Aurora Kinases.
J. Med. Chem. V. 58 362 2015
PubMed-ID: 25369539  |  Reference-DOI: 10.1021/JM501326K

(-) Compounds

Molecule 1 - AURORA KINASE A
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: KINASE DOMAIN, RESIDUES 125-399
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AURORA 2, AURORA/IPL1-RELATED KINASE 1, ARK-1, AURORA-RELATED KINASE 1, HARK1, BREAST TUMOR-AMPLIFIED KINASE, SERINE/THREONINE-PROTEIN KINASE 15, SERINE/THREONINE-PROTEIN KINASE 6, SERINE/THREONINE-PROTEIN KINASE AURORA-A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1Y3M1Ligand/IonETHYL (9S)-9-[5-(1H-BENZIMIDAZOL-2-YLSULFANYL)FURAN-2-YL]-8-HYDROXY-5,6,7,9-TETRAHYDRO-2HPYRROLO[3,4-B]QUINOLINE-3-CARBOXYLATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:147 , ALA A:160 , LYS A:162 , LEU A:164 , GLN A:185 , LEU A:208 , LEU A:210 , GLU A:211 , TYR A:212 , ALA A:213 , GLY A:216 , LEU A:263 , ALA A:273 , PHE A:275BINDING SITE FOR RESIDUE Y3M A1392

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UYN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:177 -Leu A:178

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UYN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UYN)

(-) Exons   (0, 0)

(no "Exon" information available for 4UYN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeeeee..eeeeeeee.....eeeeeeee..........hhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee........hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uyn A 125 KRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKPS 391
                                   134       144       154       164      |176       186       196       206       216       226       236       246       256       266       276|      302       312       322       332       342       352       362       372       382         
                                                                        171|                                                                                                   276|                                                                                                  
                                                                         174                                                                                                    293
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UYN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UYN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UYN)

(-) Gene Ontology  (70, 70)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    Y3M  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gln A:177 - Leu A:178   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4uyn
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  AURKA_HUMAN | O14965
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.11.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  AURKA_HUMAN | O14965
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AURKA_HUMAN | O14965: 1mq4 1muo 1ol5 1ol6 1ol7 2bmc 2c6d 2c6e 2dwb 2j4z 2j50 2np8 2w1c 2w1d 2w1e 2w1f 2w1g 2wqe 2wtv 2wtw 2x6d 2x6e 2x81 2xne 2xng 2xru 3coh 3e5a 3efw 3fdn 3h0y 3h0z 3h10 3ha6 3k5u 3lau 3m11 3myg 3nrm 3o50 3o51 3p9j 3qbn 3r21 3r22 3unz 3uo4 3uo5 3uo6 3uod 3uoh 3uoj 3uok 3uol 3up2 3up7 3vap 3w10 3w16 3w18 3w2c 4b0g 4bn1 4byi 4byj 4c3p 4c3r 4ceg 4dea 4deb 4ded 4dee 4dhf 4j8m 4j8n 4jai 4jaj 4jbo 4jbp 4jbq 4o0s 4o0u 4o0w 4prj 4utd 4uzd 4uzh 4zs0 4ztq 4ztr 4zts 5aad 5aae 5aaf 5aag 5dn3 5dnr 5dos 5dpv 5dr2 5dr6 5dr9 5drd 5dt0 5dt3 5dt4 5ew9 5g1x 5l8j 5l8k 5l8l 5lxm

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4UYN)