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(-) Description

Title :  CRYSTAL STRUCTURE OF AURORA-A KINASE IN COMPLEX WITH N-MYC
 
Authors :  M. W. Richards, S. G. Burgess, R. Bayliss
Date :  31 Mar 16  (Deposition) - 16 Nov 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Aurora, Aurora-A, Kinase, N-Myc, Myc, Neuroblastoma (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Richards, S. Burgess, E. Poon, A. Carstensen, M. Eilers, L. Chesler R. Bayliss
Structural Basis Of N-Myc Binding By Aurora-A And Its Destabilization By Kinase Inhibitors
Proc. Natl. Acad. Sci. Usa V. 113 13726 2016
PubMed-ID: 27837025  |  Reference-DOI: 10.1073/PNAS.1610626113

(-) Compounds

Molecule 1 - AURORA KINASE A
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30TEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Fragment: KINASE DOMAIN, UNP RESIDUES 122-403
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AURORA 2, AURORA/IPL1-RELATED KINASE 1, ARK-1, AURORA- RELATED KINASE 1, HARK1, BREAST TUMOR-AMPLIFIED KINASE, SERINE/ THREONINE-PROTEIN KINASE 15, SERINE/THREONINE-PROTEIN KINASE 6, SERINE/ THREONINE-PROTEIN KINASE AURORA-A, AURORA-A
 
Molecule 2 - N-MYC PROTO-ONCOGENE PROTEIN
    Chains: B
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: N-TERMINAL BIOTIN GROUP
    Synonym: CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 37, BHLHE37, N-MYC
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:140 , LYS A:141 , GLY A:142 , LYS A:143 , VAL A:147 , ALA A:160 , LYS A:162 , LEU A:194 , GLU A:211 , ALA A:213 , THR A:217 , GLU A:260 , ASN A:261 , LEU A:263 , ASP A:274 , MG A:1391 , MG A:1392 , HOH A:2012 , HOH A:2017 , HOH A:2026 , HOH A:2111 , HOH A:2112 , HOH A:2114 , HOH A:2184 , HOH A:2188 , HOH A:2189BINDING SITE FOR RESIDUE ADP A1390
2AC2SOFTWAREASP A:274 , ADP A:1390 , HOH A:2026 , HOH A:2036 , HOH A:2116 , HOH A:2117 , HOH A:2185BINDING SITE FOR RESIDUE MG A1391
3AC3SOFTWAREASN A:261 , ASP A:274 , ADP A:1390 , HOH A:2112 , HOH A:2114BINDING SITE FOR RESIDUE MG A1392

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G1X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5G1X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G1X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G1X)

(-) Exons   (0, 0)

(no "Exon" information available for 5G1X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee.....eeeeeeeehhhhhhhhhhhhhhhhhhhhh.........eeeeee...eeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee...........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5g1x A 126 RQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTtLAGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK 389
                                   135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285  |    295       305       315       325       335       345       355       365       375       385    
                                                                                                                                                                                            288-TPO                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:29
                                                             
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author .......hhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                 5g1x B  61 LSPSRGFAEHSSEPPSWVTEMLLENELWG  89
                                    70        80
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G1X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G1X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G1X)

(-) Gene Ontology  (91, 93)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AURKA_HUMAN | O14965: 1mq4 1muo 1ol5 1ol6 1ol7 2bmc 2c6d 2c6e 2dwb 2j4z 2j50 2np8 2w1c 2w1d 2w1e 2w1f 2w1g 2wqe 2wtv 2wtw 2x6d 2x6e 2x81 2xne 2xng 2xru 3coh 3e5a 3efw 3fdn 3h0y 3h0z 3h10 3ha6 3k5u 3lau 3m11 3myg 3nrm 3o50 3o51 3p9j 3qbn 3r21 3r22 3unz 3uo4 3uo5 3uo6 3uod 3uoh 3uoj 3uok 3uol 3up2 3up7 3vap 3w10 3w16 3w18 3w2c 4b0g 4bn1 4byi 4byj 4c3p 4c3r 4ceg 4dea 4deb 4ded 4dee 4dhf 4j8m 4j8n 4jai 4jaj 4jbo 4jbp 4jbq 4o0s 4o0u 4o0w 4prj 4utd 4uyn 4uzd 4uzh 4zs0 4ztq 4ztr 4zts 5aad 5aae 5aaf 5aag 5dn3 5dnr 5dos 5dpv 5dr2 5dr6 5dr9 5drd 5dt0 5dt3 5dt4 5ew9 5l8j 5l8k 5l8l 5lxm

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5G1X)