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(-) Description

Title :  UBA1 IN COMPLEX WITH UB-ABPA3 COVALENT ADDUCT
 
Authors :  M. Misra, H. Schindelin
Date :  30 May 16  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D,E  (1x)
Keywords :  E1 Enzyme, Ubiquitin Activation, Uba1 Inhibitor, Adenosyl Sulfamate, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Misra, M. Kuhn, M. Lobel, H. An, A. V. Statsyuk, C. Sotriffer, H. Schindelin
Dissecting The Specificity Of Adenosyl Sulfamate Inhibitors Targeting The Ubiquitin-Activating Enzyme.
Structure 2017
PubMed-ID: 28578874  |  Reference-DOI: 10.1016/J.STR.2017.05.001

(-) Compounds

Molecule 1 - UBIQUITIN-ACTIVATING ENZYME E1 1
    Chains: A, C
    EC Number: 6.2.1.45
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UBA1, YKL210W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - UBIQUITIN-40S RIBOSOMAL PROTEIN S31
    Chains: B, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RPS31, RPS37, UBI3, YLR167W, L9470.14
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): AB   
Biological Unit 2 (1x):   CDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 27)

Asymmetric Unit (7, 27)
No.NameCountTypeFull Name
16O22Ligand/Ion[(2~{R},3~{S},4~{R},5~{R})-5-[6-[(3-ETHYNYLPHENYL)AMINO]PURIN-9-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYLSULFAMATE
2ACT1Ligand/IonACETATE ION
3CL8Ligand/IonCHLORIDE ION
4CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
5GOL11Ligand/IonGLYCEROL
6MG1Ligand/IonMAGNESIUM ION
7SO42Ligand/IonSULFATE ION
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
16O21Ligand/Ion[(2~{R},3~{S},4~{R},5~{R})-5-[6-[(3-ETHYNYLPHENYL)AMINO]PURIN-9-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYLSULFAMATE
2ACT-1Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
5GOL7Ligand/IonGLYCEROL
6MG-1Ligand/IonMAGNESIUM ION
7SO41Ligand/IonSULFATE ION
Biological Unit 2 (5, 8)
No.NameCountTypeFull Name
16O21Ligand/Ion[(2~{R},3~{S},4~{R},5~{R})-5-[6-[(3-ETHYNYLPHENYL)AMINO]PURIN-9-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYLSULFAMATE
2ACT1Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
5GOL4Ligand/IonGLYCEROL
6MG-1Ligand/IonMAGNESIUM ION
7SO41Ligand/IonSULFATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:21 , ASN A:478 , ARG A:481 , HOH A:1214 , HOH A:1217 , HOH A:1239 , HOH A:1286 , HOH A:1287 , HOH A:1300 , HOH A:1337 , 6O2 B:101binding site for residue SO4 A 1101
02AC2SOFTWARETHR A:571 , LYS A:572binding site for residue CL A 1102
03AC3SOFTWAREARG A:861 , ARG B:74binding site for residue CL A 1103
04AC4SOFTWAREARG A:96binding site for residue CL A 1104
05AC5SOFTWAREVAL A:117binding site for residue CL A 1105
06AC6SOFTWAREASP A:282 , LYS A:285 , PHE A:391 , ASP A:392 , SER A:393 , GLU A:395 , PHE A:908 , HOH A:1255 , HOH A:1259 , HOH A:1363binding site for residue GOL A 1106
07AC7SOFTWAREARG A:288 , ASN A:344 , LEU A:394 , HOH A:1203binding site for residue GOL A 1107
08AC8SOFTWARELYS A:137 , SER A:153 , GLU A:155 , ASN A:162 , HOH A:1318binding site for residue GOL A 1108
09AC9SOFTWARELEU A:811 , GLY A:813 , PHE A:814binding site for residue GOL A 1109
10AD1SOFTWAREVAL A:819 , ASN A:828 , HIS A:830 , HOH A:1395binding site for residue GOL A 1110
11AD2SOFTWAREARG A:713binding site for residue GOL A 1111
12AD3SOFTWARETYR A:24 , LYS A:854 , HOH A:1333binding site for residue GOL A 1112
13AD4SOFTWAREGLY A:443 , ALA A:444 , ASP A:470 , ASP A:472 , ARG A:481 , GLN A:482 , LYS A:494 , VAL A:520 , ALA A:542 , LEU A:543 , ASP A:544 , ASN A:545 , ALA A:548 , SO4 A:1101 , HOH A:1239 , GLY B:76 , HOH B:214 , HOH B:220binding site for residue 6O2 B 101
14AD5SOFTWAREARG C:21 , ASN C:478 , ARG C:481 , HOH C:1245 , HOH C:1274 , HOH C:1278 , HOH C:1288 , HOH C:1306 , HOH C:1367 , HOH C:1443 , 6O2 D:101binding site for residue SO4 C 1101
15AD6SOFTWARETHR C:571 , HOH C:1442binding site for residue CL C 1102
16AD7SOFTWAREASN C:514binding site for residue CL C 1103
17AD8SOFTWAREARG C:861 , ARG D:74binding site for residue CL C 1104
18AD9SOFTWAREGLU A:944 , HOH A:1207 , HOH A:1418 , HOH A:1423 , ASP C:1008 , HOH C:1214 , HOH C:1269binding site for residue MG C 1106
19AE1SOFTWAREARG C:713 , ALA C:714 , PHE C:846binding site for residue GOL C 1107
20AE2SOFTWARELYS C:267 , GLN C:271 , SER C:274 , ASN C:275binding site for residue GOL C 1108
21AE3SOFTWAREASP C:282 , LYS C:285 , PHE C:391 , ASP C:392 , SER C:393 , GLU C:395 , LYS C:895 , PHE C:908 , HOH C:1223 , HOH C:1315 , HOH C:1354binding site for residue GOL C 1109
22AE4SOFTWAREARG C:288 , ASN C:344binding site for residue GOL C 1110
23AE5SOFTWARELEU C:114 , VAL C:117 , ASP C:136binding site for residue ACT C 1111
24AE6SOFTWAREGLY C:443 , ALA C:444 , ILE C:445 , ASP C:470 , ASN C:471 , ASP C:472 , ARG C:481 , GLN C:482 , LYS C:494 , VAL C:520 , ALA C:542 , LEU C:543 , ASP C:544 , ASN C:545 , ALA C:548 , SO4 C:1101 , HOH C:1278 , HOH C:1319 , GLY D:75binding site for Di-peptide 6O2 D 101 and GLY D 76

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L6H)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:386 -Gln A:387
2Leu A:903 -Pro A:904
3Lys C:386 -Gln C:387
4Leu C:903 -Pro C:904

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L6H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L6H)

(-) Exons   (0, 0)

(no "Exon" information available for 5L6H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1006
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhh....hhhhh..hhhhhhhhhhhhh.....eee.....hhhhhhhh.eeee....hhhhhhhhhhhhhhh..eeeeeeee..eeeeeee....eee.........eeeeeee....eeee............eeeee....hhhhhh...ee.eeee..eee...hhhhh......eeeee...eee...hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhh...................hhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh.......eeeee.....hhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh..eeee....hhhhh...hhhhhhh..eeee...hhhhhhhhhhhhhhhh..eeeeeee..eeeeeee......hhhhh........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh.......................hhhhhhhh..hhhhh.................hhhhhhhhhhhhhhhhh.....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...hhhhh.eeeee....eeeee......eeee..eeee.....eeee...hhhhhhhhhhhhhh.eeeeeee..eeeee...hhhhhhhhh..hhhhhhhhhhh........eeeeeeeee.....ee....eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5l6h A   10 AAGEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIEPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEIcADDKEGEDVEVPFITIHL 1024
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779      |798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  786|                                                                                                                                                                                                              1006-CSO              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   796                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                             
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhhhheeee..ee......hhhhh.....eeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                5l6h B    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76
                                    10        20        30        40        50        60        70      


Chain C from PDB  Type:PROTEIN  Length:1005
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhh....hhhhh..hhhhhhhhhhhhh.....eee.....hhhhhhhh.eeee....hhhhhhhhhhhhhhhh.eeeeeeee..eeeeeee....eee.........eeeeeee....eeee............eeeee....hhhhhh...ee.eeee..eee...hhhhh......eeeee...eee...hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhh...................hhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh.......eeeee.....hhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh..eeee....hhhhh...hhhhhhh..eeee...hhhhhhhhhhhhhhh...eeeeeee..eeeeeee......hhhhh........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh......................hhhhhhhh..hhhhh.................hhhhhhhhhhhhhhhhh.....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...hhhhh.eeeee....eeeee......eeee..eeee.....eeee...hhhhhhhhhhhhhh.eeeeeee..eeeee...hhhhhhhhh..hhhhhhhhhhh........eeeeeeeee.....ee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5l6h C   11 AGEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIEPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEIcADDKEGEDVEVPFITIHL 1024
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780     ||799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 786|                                                                                                                                                                                                              1006-CSO              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  796                                                                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:76
                                                                                                             
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhhhheeee..ee......hhhhh.....eeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                5l6h D    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76
                                    10        20        30        40        50        60        70      


Chain E from PDB  Type:PROTEIN  Length:72
                                                                                                         
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                5l6h E    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 3CMM: 1,2)

(no "SCOP Domain" information available for 5L6H, only for superseded entry 3CMM replaced by 5L6H)

(-) CATH Domains  (0, 0 ; only for superseded entry 3CMM: 1,2)

(no "CATH Domain" information available for 5L6H, only for superseded entry 3CMM replaced by 5L6H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L6H)

(-) Gene Ontology  (23, 25)

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  5l6h
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    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
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  RS31_YEAST | P05759
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  UBA1_YEAST | P22515
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  6.2.1.45
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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
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Access by UniProt ID/Accession number
  RS31_YEAST | P05759
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  UBA1_YEAST | P22515
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RS31_YEAST | P05759: 1otr 1q0w 1wr1 1zgu 1zw7 2g3q 2jt4 2jwz 2l00 3cmm 3j6x 3j6y 3j77 3j78 3l0w 3l10 3v88 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v88 4v8y 4v8z 4v92 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5i4l 5juo 5jup 5jus 5jut 5juu 5l6i 5l6j 5lyb 5m1j 5mc6 5tga 5tgm 5wyj
        UBA1_YEAST | P22515: 3cmm 4nnj 5l6i 5l6j

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5L6H)