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5L6H
Biol. Unit 1
Info
Asym.Unit (782 KB)
Biol.Unit 1 (378 KB)
Biol.Unit 2 (401 KB)
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(1)
Title
:
UBA1 IN COMPLEX WITH UB-ABPA3 COVALENT ADDUCT
Authors
:
M. Misra, H. Schindelin
Date
:
30 May 16 (Deposition) - 14 Jun 17 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D,E (1x)
Keywords
:
E1 Enzyme, Ubiquitin Activation, Uba1 Inhibitor, Adenosyl Sulfamate, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Misra, M. Kuhn, M. Lobel, H. An, A. V. Statsyuk, C. Sotriffer, H. Schindelin
Dissecting The Specificity Of Adenosyl Sulfamate Inhibitors Targeting The Ubiquitin-Activating Enzyme.
Structure 2017
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: [(2~{R},3~{S},4~{R},5~{R})-5-[6-[(... (6O2a)
1b: [(2~{R},3~{S},4~{R},5~{R})-5-[6-[(... (6O2b)
2a: ACETATE ION (ACTa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
4a: S-HYDROXYCYSTEINE (CSOa)
4b: S-HYDROXYCYSTEINE (CSOb)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
6a: MAGNESIUM ION (MGa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6O2
1
Ligand/Ion
[(2~{R},3~{S},4~{R},5~{R})-5-[6-[(3-ETHYNYLPHENYL)AMINO]PURIN-9-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYLSULFAMATE
2
ACT
-1
Ligand/Ion
ACETATE ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
5
GOL
7
Ligand/Ion
GLYCEROL
6
MG
-1
Ligand/Ion
MAGNESIUM ION
7
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:21 , ASN A:478 , ARG A:481 , HOH A:1214 , HOH A:1217 , HOH A:1239 , HOH A:1286 , HOH A:1287 , HOH A:1300 , HOH A:1337 , 6O2 B:101
binding site for residue SO4 A 1101
02
AC2
SOFTWARE
THR A:571 , LYS A:572
binding site for residue CL A 1102
03
AC3
SOFTWARE
ARG A:861 , ARG B:74
binding site for residue CL A 1103
04
AC4
SOFTWARE
ARG A:96
binding site for residue CL A 1104
05
AC5
SOFTWARE
VAL A:117
binding site for residue CL A 1105
06
AC6
SOFTWARE
ASP A:282 , LYS A:285 , PHE A:391 , ASP A:392 , SER A:393 , GLU A:395 , PHE A:908 , HOH A:1255 , HOH A:1259 , HOH A:1363
binding site for residue GOL A 1106
07
AC7
SOFTWARE
ARG A:288 , ASN A:344 , LEU A:394 , HOH A:1203
binding site for residue GOL A 1107
08
AC8
SOFTWARE
LYS A:137 , SER A:153 , GLU A:155 , ASN A:162 , HOH A:1318
binding site for residue GOL A 1108
09
AC9
SOFTWARE
LEU A:811 , GLY A:813 , PHE A:814
binding site for residue GOL A 1109
10
AD1
SOFTWARE
VAL A:819 , ASN A:828 , HIS A:830 , HOH A:1395
binding site for residue GOL A 1110
11
AD2
SOFTWARE
ARG A:713
binding site for residue GOL A 1111
12
AD3
SOFTWARE
TYR A:24 , LYS A:854 , HOH A:1333
binding site for residue GOL A 1112
13
AD4
SOFTWARE
GLY A:443 , ALA A:444 , ASP A:470 , ASP A:472 , ARG A:481 , GLN A:482 , LYS A:494 , VAL A:520 , ALA A:542 , LEU A:543 , ASP A:544 , ASN A:545 , ALA A:548 , SO4 A:1101 , HOH A:1239 , GLY B:76 , HOH B:214 , HOH B:220
binding site for residue 6O2 B 101
14
AD9
SOFTWARE
GLU A:944 , HOH A:1207 , HOH A:1418 , HOH A:1423 , ASP C:1008 , HOH C:1214 , HOH C:1269
binding site for residue MG C 1106
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0 ; only for superseded entry 3CMM: 1,2)
Info
All SCOP Domains
1a: SCOP_d3cmmb_ ()
1b: SCOP_d3cmmd_ ()
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CATH Domains
(0, 0 ; only for superseded entry 3CMM: 1,2)
Info
all CATH domains
1a: CATH_3cmmB00 ()
1b: CATH_3cmmD00 ()
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (782 KB)
Header - Asym.Unit
Biol.Unit 1 (378 KB)
Header - Biol.Unit 1
Biol.Unit 2 (401 KB)
Header - Biol.Unit 2
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