5KH3 - JenaLib

Title :   CRYSTAL STRUCTURE OF FRAGMENT (3-(5-CHLORO-1,3-BENZOTHIAZOL-2-YL) PROPANOIC ACID) BOUND IN THE UBIQUITIN BINDING POCKET OF THE HDAC6 ZINC-FINGER DOMAIN

Authors :   R. J. Harding, A. Dong, M. Ravichandran, R. Ferreira De Freitas, M. Sc C. Bountra, A. M. Edwards, V. Santhakumar, C. M. Arrowsmith, Structur Genomics Consortium (Sgc)

Date :   14 Jun 16 (Deposition) - 27 Jul 16 (Release) - 27 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A

Keywords :   Histone Deacetylase, Hdac, Hdac6, Fragment Screening, Structural Genomics Consortium, Sgc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. J. Harding, A. Dong, M. Ravichandran, R. Ferreira De Freitas, M. Schapira, C. Bountra, A. M. Edwards, V. Santhakumar, C. M. Arrowsmith, Structural Genomics Consortium (Sgc)
Crystal Structure Of Fragment (3-(5-Chloro-1, 3-Benzothiazol-2-Yl)Propanoic Acid) Bound In The Ubiquitin Binding Pocket Of The Hdac6 Zinc-Finger Domai
To Be Published
PubMed: search

Compounds

Molecule 1 - HISTONE DEACETYLASE 6
	Chains	:	A
	EC Number	:	3.5.1.98
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-LIC
	Expression System Strain	:	BL21 (DE3) CODON PLUS
	Expression System Taxid	:	469008
	Gene	:	HDAC6, KIAA0901, JM21
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HD6

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 17)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:1145 , CYS A:1148 , HIS A:1164 , HIS A:1170	binding site for residue ZN A 1301
2	AC2	SOFTWARE	CYS A:1133 , CYS A:1136 , CYS A:1153 , HIS A:1160	binding site for residue ZN A 1302
3	AC3	SOFTWARE	CYS A:1113 , HIS A:1115 , CYS A:1183 , CYS A:1186	binding site for residue ZN A 1303
4	AC4	SOFTWARE	TRP A:1143 , GLY A:1154 , ARG A:1155 , LEU A:1162 , TRP A:1182 , TYR A:1184 , TYR A:1189 , HIS A:1203 , HOH A:1409 , HOH A:1452	binding site for residue 6U6 A 1317

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:101
                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh......................eeee.....eee.....hhhhhhhhhhh..eeee.....eee....ee..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                5kh3 A 1108 SPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNIAHQNKFG 1208
                                  1117      1127      1137      1147      1157      1167      1177      1187      1197      1207

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (90, 90)

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	Cis Peptide Bonds
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Description