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(-) Description

Title :  CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV IN COMPLEX WITH SYR-472
 
Authors :  R. J. Skene, A. J. Jennings
Date :  03 Jun 16  (Deposition) - 13 Jul 16  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Peptidase, Glp-1, Metabolic Disease, Co-Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. E. Grimshaw, A. Jennings, R. Kamran, H. Ueno, N. Nishigaki, T. Kosaka, A. Tani, H. Sano, Y. Kinugawa, E. Koumura, L. Shi, K. Takeuch
Trelagliptin (Syr-472, Zafatek), Novel Once-Weekly Treatmen For Type 2 Diabetes, Inhibits Dipeptidyl Peptidase-4 (Dpp-4 Via A Non-Covalent Mechanism.
Plos One V. 11 57509 2016
PubMed-ID: 27328054  |  Reference-DOI: 10.1371/JOURNAL.PONE.0157509

(-) Compounds

Molecule 1 - DIPEPTIDYL PEPTIDASE 4
    Chains: A, B, C, D
    EC Number: 3.4.14.5
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Taxid: 10469
    Gene: DPP4, ADCP2, CD26
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADABP,ADENOSINE DEAMINASE COMPLEXING PROTEIN 2,ADCP-2, DIPEPTIDYL PEPTIDASE IV,DPP IV,T-CELL ACTIVATION ANTIGEN CD26,TP103

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 31)

Asymmetric Unit (2, 31)
No.NameCountTypeFull Name
16RL4Ligand/Ion2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]-3-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]METHYL]-4-FLUORANYL-BENZENECARBONITRILE
2NAG27Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
16RL2Ligand/Ion2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]-3-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]METHYL]-4-FLUORANYL-BENZENECARBONITRILE
2NAG16Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 13)
No.NameCountTypeFull Name
16RL2Ligand/Ion2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]-3-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]METHYL]-4-FLUORANYL-BENZENECARBONITRILE
2NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (2, 18)
No.NameCountTypeFull Name
16RL2Ligand/Ion2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]-3-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]METHYL]-4-FLUORANYL-BENZENECARBONITRILE
2NAG16Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:125 , GLU A:205 , GLU A:206 , TYR A:547 , SER A:630 , TYR A:631 , VAL A:656 , TRP A:659 , TYR A:662 , TYR A:666 , VAL A:711 , HOH A:1674 , HOH A:1906binding site for residue 6RL A 1510
02AC2SOFTWAREARG B:125 , GLU B:205 , GLU B:206 , TYR B:547 , SER B:630 , TYR B:631 , VAL B:656 , TRP B:659 , TYR B:662 , TYR B:666 , ASN B:710 , VAL B:711 , HOH B:1001binding site for residue 6RL B 808
03AC3SOFTWAREARG C:125 , GLU C:205 , GLU C:206 , TYR C:547 , SER C:630 , TYR C:631 , VAL C:656 , TRP C:659 , TYR C:662 , TYR C:666 , VAL C:711 , HOH C:1632binding site for residue 6RL C 1506
04AC4SOFTWAREARG D:125 , GLU D:205 , GLU D:206 , TYR D:547 , SER D:630 , TYR D:631 , VAL D:656 , TRP D:659 , TYR D:662 , TYR D:666 , ASN D:710 , VAL D:711 , HOH D:1720 , HOH D:1862binding site for residue 6RL D 1507
05AC5SOFTWAREASN A:85 , SER A:86 , SER A:87binding site for Mono-Saccharide NAG A 1509 bound to ASN A 85
06AC6SOFTWAREARG A:147 , ASN A:150 , HOH A:1720 , HOH A:1844binding site for Poly-Saccharide residues NAG A 1501 through NAG A 1502 bound to ASN A 150
07AC7SOFTWAREASN A:219 , THR A:221 , GLN A:308 , GLU A:309binding site for Mono-Saccharide NAG A 1503 bound to ASN A 219
08AC8SOFTWAREILE A:194 , ASN A:229 , THR A:231 , GLU A:232binding site for Poly-Saccharide residues NAG A 1504 through NAG A 1505 bound to ASN A 229
09AC9SOFTWARETRP A:187 , VAL A:279 , ASN A:281 , HOH A:1609binding site for Poly-Saccharide residues NAG A 1506 through NAG A 1507 bound to ASN A 281
10AD1SOFTWAREILE A:319 , ASN A:321 , SER A:349 , THR A:350 , ARG A:596binding site for Mono-Saccharide NAG A 1508 bound to ASN A 321
11AD2SOFTWARETYR B:83 , ASN B:85 , SER B:86 , SER B:87 , HOH B:949 , HOH B:1152binding site for Mono-Saccharide NAG B 801 bound to ASN B 85
12AD3SOFTWAREASN B:150 , HOH B:958binding site for Mono-Saccharide NAG B 802 bound to ASN B 150
13AD4SOFTWAREASN B:219 , THR B:221 , GLN B:308 , GLU B:309 , HOH B:901 , HOH B:1036binding site for Mono-Saccharide NAG B 807 bound to ASN B 219
14AD5SOFTWAREILE B:194 , ASN B:229 , THR B:231 , GLU B:232 , HOH B:1037binding site for Poly-Saccharide residues NAG B 803 through NAG B 804 bound to ASN B 229
15AD6SOFTWAREVAL B:279 , ASN B:281binding site for Mono-Saccharide NAG B 805 bound to ASN B 281
16AD7SOFTWAREILE B:319 , ASN B:321 , MET B:348 , SER B:349 , THR B:350 , ARG B:596 , HOH B:939binding site for Mono-Saccharide NAG B 806 bound to ASN B 321
17AD8SOFTWAREILE C:148 , ASN C:150 , HOH C:1799binding site for Mono-Saccharide NAG C 1501 bound to ASN C 150
18AD9SOFTWAREASN C:229 , THR C:231 , GLU C:232 , HOH C:1601binding site for Poly-Saccharide residues NAG C 1502 through NAG C 1503 bound to ASN C 229
19AE1SOFTWAREASN C:281binding site for Mono-Saccharide NAG C 1504 bound to ASN C 281
20AE2SOFTWAREILE C:319 , ASN C:321 , SER C:349 , ARG C:596binding site for Mono-Saccharide NAG C 1505 bound to ASN C 321
21AE3SOFTWAREILE C:319 , ASN C:321 , SER C:349 , ARG C:596binding site for Mono-Saccharide NAG C 1505 bound to ASN C 321
22AE4SOFTWAREARG D:147 , ASN D:150 , HOH D:1775 , HOH D:1824binding site for Mono-Saccharide NAG D 1501 bound to ASN D 150
23AE5SOFTWAREASN D:219 , THR D:221 , GLN D:308 , GLU D:309 , HOH D:1618binding site for Mono-Saccharide NAG D 1502 bound to ASN D 219
24AE6SOFTWAREASN D:229 , THR D:231 , GLU D:232 , LYS D:267 , HOH D:1687 , HOH D:1723 , HOH D:1828binding site for Poly-Saccharide residues NAG D 1503 through NAG D 1504 bound to ASN D 229
25AE7SOFTWAREVAL D:279 , ASN D:281 , HOH D:1718binding site for Mono-Saccharide NAG D 1505 bound to ASN D 281
26AE8SOFTWAREILE D:319 , ASN D:321 , SER D:349 , ARG D:596binding site for Mono-Saccharide NAG D 1506 bound to ASN D 321

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:328 -A:339
2A:385 -A:394
3A:444 -A:447
4A:454 -A:472
5A:649 -A:762
6B:328 -B:339
7B:385 -B:394
8B:444 -B:447
9B:454 -B:472
10B:649 -B:762
11C:328 -C:339
12C:385 -C:394
13C:444 -C:447
14C:454 -C:472
15C:649 -C:762
16D:328 -D:339
17D:385 -D:394
18D:444 -D:447
19D:454 -D:472
20D:649 -D:762

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:474 -Pro A:475
2Gly B:474 -Pro B:475
3Gly C:474 -Pro C:475
4Gly D:474 -Pro D:475

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KBY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KBY)

(-) Exons   (0, 0)

(no "Exon" information available for 5KBY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:725
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhhh........eee....eeee...eeeee.......eee.............eeee.....eeeeeeeeee.....eeeeeeeee....ee.........eeeeee......eeeee..eeeee.......ee.........eee...hhhhhhhh......eee.....eeeeeeee.....eeeeee.........eeeeee.........eeeeeeee...........eeee..hhhhhh..eeeeeeeeee..eeeeeeee....eeeeeeeeee....eeee.hhhheeee..............ee.....eeeeeee.....eeeeeee......ee.......eeeeeee...eeeeee.hhhhh....eeeeee..eeeeeee............eeeee.....eeeeee......eeeeee....eeeeeee.hhhhhhhhhhee..eeeeeeeee..eeeeeeeee.........eeeeeee...............hhhhhhhhhhh.eeeee........hhhhhhhhh....hhhhhhhhhhhhhhhh...eeeeeeeeeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh......hhhhhhhh.hhhhhhhhhhheeeeeee......hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kby A  40 RKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
                                    49        59        69  ||    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761     
                                                           72|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                                                            75                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:733
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee.hhhhhhhh.........ee....eeeeee..eeeeee.....eeeee...........eeeeee.....eeeeeeeeee.....eeeeeeeee....ee...........eeee......eeeee..eeeee.......ee.........eee...hhhhhhhh......eee.....eeeeeeee.....eeeeee.........eeeeee.........eeeeeeee.hhh.......eeee..hhhhhh..eeeeeeeeee..eeeeeeee....eeeeeeeeee....eeee.hhhheeee..............ee.....eeeeeee.....eeeeeee......ee.......eeeeeee...eeeeee.hhhhh....eeeeee..eeeeeee............eeeee.....eeeeee......eeeeee....eeeeeee.hhhhhhhh..ee..eeeeeeeee..eeeeeeeee.........eeeeeee...............hhhhhhhhhhh.eeeee........hhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh......hhhhhhhh.hhhhhhhhhhheeeeeee......hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kby B  34 HHHHHSRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763   


Chain C from PDB  Type:PROTEIN  Length:717
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhh................eee...eee..................eeee.....eeeeeeeeee.....eeeeeeeee....ee.........eeeeee......eeeee..eeeee.......ee.........eee...hhhhhhhh......eee.....eeeeeeee.....eeeeee.........eeeeee.........eeeeeeee............ee...hhhhhh..eeeeeeee....eeeeeeee....eeeeeeeeee....eeee.....eeee..............ee.....eeeeeee.....eeeeeee......ee.......eeeeeee...eeeeee.hhhhh....eeeeee......eee............eeeee.....eeeeee......eeeeee....eeeeeee.hhhhhhhhh.ee..eeeeeeeee..eeeeeeeee.........eeeeeee...............hhhhhhhhh...eeeee........hhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh......hhhhhhhh.hhhhhhhhhhheeeeeee.......hhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kby C  40 RKTYTLTDYLKNTYRLKLYSLRWISDHEYLYILVFNAEYVFLENTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
                                    49        59        69||      88   ||   99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       
                                                         70|     83|  92|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
                                                          76      88   94                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:725
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhh.........eee....eee....ee.ee.......eee.............eeee.....eeeeeeeeee.....eeeeeeeee....ee.........eeeeee......eeeee..eeeee.......ee.........eee...hhhhhhhh......eee.....eeeeeeee.....eeeeee.........eeeeee.........eeeeeeee............ee...hhhhhh..eeeeeeeeee..eeeeeeee....eeeeeeeeee....eeee.hhhheeee..............ee.....eeeeeee.....eeeeeee......ee.......eeeeeee...eeeeee.hhhhh....eeeeee......eee............eeeee.....eeeeee......eeeeee....eeeeeee.hhhhhhhhh.ee..eeeeeeeee..eeeeeeeee.........eeeeeee...............hhhhhhhhh...eeeee........hhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhheeeeeee......hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kby D  40 RKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
                                    49        59        69  ||    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761     
                                                           72|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                                                            75
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KBY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KBY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KBY)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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  DPP4_HUMAN | P27487
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPP4_HUMAN | P27487: 1j2e 1n1m 1nu6 1nu8 1pfq 1r9m 1r9n 1rwq 1tk3 1tkr 1u8e 1w1i 1wcy 1x70 2ajl 2bgn 2bgr 2bub 2fjp 2g5p 2g5t 2g63 2hha 2i03 2i78 2iit 2iiv 2jid 2oag 2ogz 2ole 2onc 2oph 2oqi 2oqv 2p8s 2qjr 2qky 2qoe 2qt9 2qtb 2rgu 2rip 3bjm 3c43 3c45 3ccb 3ccc 3d4l 3eio 3f8s 3g0b 3g0c 3g0d 3g0g 3h0c 3hab 3hac 3kwf 3kwj 3nox 3o95 3o9v 3oc0 3opm 3q0t 3q8w 3qbj 3sww 3sx4 3vjk 3vjl 3vjm 3w2t 3wqh 4a5s 4dsa 4dsz 4dtc 4g1f 4j3j 4jh0 4kr0 4l72 4lko 4n8d 4n8e 4pnz 4pv7 4qzv 5i7u 5ism 5j3j 5t4b 5t4e 5t4f 5t4h

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