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Asym. Unit
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (516 KB)
Biol.Unit 2 (515 KB)
Biol.Unit 3 (1022 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV IN COMPLEX WITH SYR-472
Authors
:
R. J. Skene, A. J. Jennings
Date
:
03 Jun 16 (Deposition) - 13 Jul 16 (Release) - 07 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.24
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Peptidase, Glp-1, Metabolic Disease, Co-Complex, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. E. Grimshaw, A. Jennings, R. Kamran, H. Ueno, N. Nishigaki, T. Kosaka, A. Tani, H. Sano, Y. Kinugawa, E. Koumura, L. Shi, K. Takeuch
Trelagliptin (Syr-472, Zafatek), Novel Once-Weekly Treatmen For Type 2 Diabetes, Inhibits Dipeptidyl Peptidase-4 (Dpp-4 Via A Non-Covalent Mechanism.
Plos One V. 11 57509 2016
[
close entry info
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Hetero Components
(2, 31)
Info
All Hetero Components
1a: 2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1... (6RLa)
1b: 2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1... (6RLb)
1c: 2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1... (6RLc)
1d: 2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1... (6RLd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
2y: N-ACETYL-D-GLUCOSAMINE (NAGy)
2z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6RL
4
Ligand/Ion
2-[[6-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]-3-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]METHYL]-4-FLUORANYL-BENZENECARBONITRILE
2
NAG
27
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:125 , GLU A:205 , GLU A:206 , TYR A:547 , SER A:630 , TYR A:631 , VAL A:656 , TRP A:659 , TYR A:662 , TYR A:666 , VAL A:711 , HOH A:1674 , HOH A:1906
binding site for residue 6RL A 1510
02
AC2
SOFTWARE
ARG B:125 , GLU B:205 , GLU B:206 , TYR B:547 , SER B:630 , TYR B:631 , VAL B:656 , TRP B:659 , TYR B:662 , TYR B:666 , ASN B:710 , VAL B:711 , HOH B:1001
binding site for residue 6RL B 808
03
AC3
SOFTWARE
ARG C:125 , GLU C:205 , GLU C:206 , TYR C:547 , SER C:630 , TYR C:631 , VAL C:656 , TRP C:659 , TYR C:662 , TYR C:666 , VAL C:711 , HOH C:1632
binding site for residue 6RL C 1506
04
AC4
SOFTWARE
ARG D:125 , GLU D:205 , GLU D:206 , TYR D:547 , SER D:630 , TYR D:631 , VAL D:656 , TRP D:659 , TYR D:662 , TYR D:666 , ASN D:710 , VAL D:711 , HOH D:1720 , HOH D:1862
binding site for residue 6RL D 1507
05
AC5
SOFTWARE
ASN A:85 , SER A:86 , SER A:87
binding site for Mono-Saccharide NAG A 1509 bound to ASN A 85
06
AC6
SOFTWARE
ARG A:147 , ASN A:150 , HOH A:1720 , HOH A:1844
binding site for Poly-Saccharide residues NAG A 1501 through NAG A 1502 bound to ASN A 150
07
AC7
SOFTWARE
ASN A:219 , THR A:221 , GLN A:308 , GLU A:309
binding site for Mono-Saccharide NAG A 1503 bound to ASN A 219
08
AC8
SOFTWARE
ILE A:194 , ASN A:229 , THR A:231 , GLU A:232
binding site for Poly-Saccharide residues NAG A 1504 through NAG A 1505 bound to ASN A 229
09
AC9
SOFTWARE
TRP A:187 , VAL A:279 , ASN A:281 , HOH A:1609
binding site for Poly-Saccharide residues NAG A 1506 through NAG A 1507 bound to ASN A 281
10
AD1
SOFTWARE
ILE A:319 , ASN A:321 , SER A:349 , THR A:350 , ARG A:596
binding site for Mono-Saccharide NAG A 1508 bound to ASN A 321
11
AD2
SOFTWARE
TYR B:83 , ASN B:85 , SER B:86 , SER B:87 , HOH B:949 , HOH B:1152
binding site for Mono-Saccharide NAG B 801 bound to ASN B 85
12
AD3
SOFTWARE
ASN B:150 , HOH B:958
binding site for Mono-Saccharide NAG B 802 bound to ASN B 150
13
AD4
SOFTWARE
ASN B:219 , THR B:221 , GLN B:308 , GLU B:309 , HOH B:901 , HOH B:1036
binding site for Mono-Saccharide NAG B 807 bound to ASN B 219
14
AD5
SOFTWARE
ILE B:194 , ASN B:229 , THR B:231 , GLU B:232 , HOH B:1037
binding site for Poly-Saccharide residues NAG B 803 through NAG B 804 bound to ASN B 229
15
AD6
SOFTWARE
VAL B:279 , ASN B:281
binding site for Mono-Saccharide NAG B 805 bound to ASN B 281
16
AD7
SOFTWARE
ILE B:319 , ASN B:321 , MET B:348 , SER B:349 , THR B:350 , ARG B:596 , HOH B:939
binding site for Mono-Saccharide NAG B 806 bound to ASN B 321
17
AD8
SOFTWARE
ILE C:148 , ASN C:150 , HOH C:1799
binding site for Mono-Saccharide NAG C 1501 bound to ASN C 150
18
AD9
SOFTWARE
ASN C:229 , THR C:231 , GLU C:232 , HOH C:1601
binding site for Poly-Saccharide residues NAG C 1502 through NAG C 1503 bound to ASN C 229
19
AE1
SOFTWARE
ASN C:281
binding site for Mono-Saccharide NAG C 1504 bound to ASN C 281
20
AE2
SOFTWARE
ILE C:319 , ASN C:321 , SER C:349 , ARG C:596
binding site for Mono-Saccharide NAG C 1505 bound to ASN C 321
21
AE3
SOFTWARE
ILE C:319 , ASN C:321 , SER C:349 , ARG C:596
binding site for Mono-Saccharide NAG C 1505 bound to ASN C 321
22
AE4
SOFTWARE
ARG D:147 , ASN D:150 , HOH D:1775 , HOH D:1824
binding site for Mono-Saccharide NAG D 1501 bound to ASN D 150
23
AE5
SOFTWARE
ASN D:219 , THR D:221 , GLN D:308 , GLU D:309 , HOH D:1618
binding site for Mono-Saccharide NAG D 1502 bound to ASN D 219
24
AE6
SOFTWARE
ASN D:229 , THR D:231 , GLU D:232 , LYS D:267 , HOH D:1687 , HOH D:1723 , HOH D:1828
binding site for Poly-Saccharide residues NAG D 1503 through NAG D 1504 bound to ASN D 229
25
AE7
SOFTWARE
VAL D:279 , ASN D:281 , HOH D:1718
binding site for Mono-Saccharide NAG D 1505 bound to ASN D 281
26
AE8
SOFTWARE
ILE D:319 , ASN D:321 , SER D:349 , ARG D:596
binding site for Mono-Saccharide NAG D 1506 bound to ASN D 321
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (1.0 MB)
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Header - Biol.Unit 1
Biol.Unit 2 (515 KB)
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Biol.Unit 3 (1022 KB)
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