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(-) Description

Title :  CRYSTAL STRUCTURE OF MICROCIN IMMUNITY PROTEIN MCCF FROM BACILLUS ANTHRACIS IN COMPLEX WITH MCC
 
Authors :  B. Nocek, A. Kulikovsky, K. Severinov, S. Dubiley, A. Joachimiak, W. F. Center For Structural Genomics Of Infectious Diseases (Csgi
Date :  31 May 16  (Deposition) - 22 Mar 17  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Mccf, Mcc, Immunity Protein, Microcin C, S66 Hydrolase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Hydrolase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, A. Kulikovsky, K. Severinov, S. Dubiley, A. Joachimiak, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Microcin Immunity Protein Mccf From Bacillus Anthracis In Complex With Mcc
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MICROCIN C7 SELF-IMMUNITY PROTEIN MCCF
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: MCCF
    Organism Scientific: BACILLUS ANTHRACIS STR. STERNE
    Organism Taxid: 260799
    Synonym: MICROCIN IMMUNITY PROTEIN MCCF,PEPTIDASE S66
 
Molecule 2 - MICROCIN C
    Chains: C, D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1AMP2Mod. Amino AcidADENOSINE MONOPHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
3XSN2Mod. Amino AcidL-ALPHA-ASPARAGINE
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1AMP1Mod. Amino AcidADENOSINE MONOPHOSPHATE
2MSE8Mod. Amino AcidSELENOMETHIONINE
3XSN1Mod. Amino AcidL-ALPHA-ASPARAGINE
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1AMP1Mod. Amino AcidADENOSINE MONOPHOSPHATE
2MSE8Mod. Amino AcidSELENOMETHIONINE
3XSN1Mod. Amino AcidL-ALPHA-ASPARAGINE

(-) Sites  (0, 0)

(no "Site" information available for 5K99)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K99)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Glu A:143 -Pro A:144
2Leu A:163 -Pro A:164
3His A:305 -Pro A:306
4Glu B:143 -Pro B:144
5Leu B:163 -Pro B:164
6His B:305 -Pro B:306

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K99)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K99)

(-) Exons   (0, 0)

(no "Exon" information available for 5K99)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeeee....hhhhhhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh..eee..hhhhhhh...hhhhhhhhhhhhhhh......ee.....ee................ee...eeee..eeeeeeeeeehhhhh...............eeeee....hhhhhhhhhhhhhhhhhhhhh.eeeee............hhhhhhhhhhh.....eeeee..........eee..eeeee....eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k99 A  -2 SNAmPLPKSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCImSTIGGmNSNSLLPYIDYDAFQNNPKImIGYSDATALLLGIYAKTGIPTFYGPALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPNNWISVTNGQATGRVIGGNLNTIQGIWGSPYmPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGIILGKHEQFDDCGTNRKPYEILLEVLQNQRIPLLADFDCCHTHPmITmPIGVQVKmDATNKTIHILEKWKI 333
                               |     7        17        27        37        47        57        67        77   |    87        97       107|      117       127       137       147       157       167       177       187       197       207       217     | 227       237       247       257       267       277       287       297       307  |    317|      327      
                               |                                                                              81-MSE |                  108-MSE                                                                                                            223-MSE                                                                             307-MSE    318-MSE           
                               1-MSE                                                                                87-MSE                                                                                                                                                                                                                        310-MSE                   


Chain B from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhhhhhhhh.eeee.............hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh..eee..hhhhhhh...hhhhhhhhhhhhhhh......ee.....ee................ee...eeee..eeeeeeeeeehhhhh...............eeeee....hhhhhhhhhhhhhhhhhhhhh.eeeee............hhhhhhhhhhh.....eeeee..........eee..eeeee....eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k99 B   1 mPLPKSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCImSTIGGmNSNSLLPYIDYDAFQNNPKImIGYSDATALLLGIYAKTGIPTFYGPALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPNNWISVTNGQATGRVIGGNLNTIQGIWGSPYmPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGIILGKHEQFDDCGTNRKPYEILLEVLQNQRIPLLADFDCCHTHPmITmPIGVQVKmDATNKTIHILEKWKI 333
                            |       10        20        30        40        50        60        70        80|     | 90       100       110       120       130       140       150       160       170       180       190       200       210       220  |    230       240       250       260       270       280       290       300      |310       320       330   
                            1-MSE                                                                          81-MSE |                  108-MSE                                                                                                            223-MSE                                                                             307-MSE    318-MSE           
                                                                                                                 87-MSE                                                                                                                                                                                                                        310-MSE                   


Chain C from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5k99 C   2 RTGNAxx   8
                                 ||
                                 7-XSN
                                  8-AMP


Chain D from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5k99 D   2 RTGNAxx   8
                                 ||
                                 7-XSN
                                  8-AMP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K99)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K99)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K99)

(-) Gene Ontology  (3, 3)

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  Cis Peptide Bonds
    Glu A:143 - Pro A:144   [ RasMol ]  
    Glu B:143 - Pro B:144   [ RasMol ]  
    His A:305 - Pro A:306   [ RasMol ]  
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        Q81RT8_BACAN | Q81RT8: 3gjz 3sr3 3t5m 3tyx 3u1b 4jvo 4mi1 4mjx

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