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(-) Description

Title :  STRUCTURE OF DESIGNED ZINC BINDING PROTEIN ZE2 BOUND TO ZN2+
 
Authors :  S. L. Guffy, B. S. Der, B. Kuhlman
Date :  26 May 16  (Deposition) - 03 Aug 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.39
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Metalloprotein, Designed, Tim Barrel, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. L. Guffy, B. S. Der, B. Kuhlman
Probing The Minimal Determinants Of Zinc Binding With Computational Protein Design.
Protein Eng. Des. Sel. V. 29 327 2016
PubMed-ID: 27358168  |  Reference-DOI: 10.1093/PROTEIN/GZW026

(-) Compounds

Molecule 1 - INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE
    Chains: A, B
    EC Number: 4.1.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-MBP
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: TRPC, SSO0895
    Organism Scientific: SULFOLOBUS SOLFATARICUS (STRAIN ATCC 35092 / DSM 1617 / JCM 11322 / P2)
    Organism Taxid: 273057
    Other Details: COMPUTATIONALLY DESIGNED ZINC BINDING PROTEIN USING PDB ID 1A53 AS A STARTING SCAFFOLD.
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2
    Synonym: IGPS

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:179 , HIS A:183 , HIS A:210binding site for residue ZN A 301
2AC2SOFTWAREHIS B:179 , HIS B:183 , HIS B:210binding site for residue ZN B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K7J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K7J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K7J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K7J)

(-) Exons   (0, 0)

(no "Exon" information available for 5K7J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.............hhhhhhhhhhhh....eeeee............hhhhhhhhhhh...eeeee........hhhhhhhhhh.....eeee....hhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhh...eeeee...hhhhhhhhhh.....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k7j A   1 PRYLKGWLKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILTEEKYFNGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIGINDENDLDIALRIGARFIGIHSHNKENQRKLISMIPSNVVKVAAHGISERNEIEELRKLGVNAFLIGSSLMRNPEKIKEFIL 247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180||     197       207       217       227       237       247
                                                                                                                                                                                                             180||                                                          
                                                                                                                                                                                                              183|                                                          
                                                                                                                                                                                                               189                                                          


Chain B from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.............hhhhhhhhhhhh....eeeee............hhhhhhhhhhh...eeeee........hhhhhhhhhh.....eeee....hhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k7j B   1 PRYLKGWLKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILTEEKYFNGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIGINDENDLDIALRIGARFIGIHSDHETLNKENQRKLISMIPNVVKVAAHGISERNEIEELRKLGVNAFLIGSSLMRNPEKIKEFIL 247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180|   || 193       204       214       224       234       244   
                                                                                                                                                                                                             180| 186|         201|                                            
                                                                                                                                                                                                              182  189          203
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K7J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K7J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K7J)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPC_SULSO | Q06121: 1a53 1igs 1juk 1jul 1lbf 1lbl 2c3z 3nyz 3nz1 3tc6 3tc7 4a29 4a2r 4a2s 4iww 4ix0 4lny 4ou1 5an7 5aou

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