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(-) Description

Title :  CRYSTAL STRUCTURE OF ENGINEERED PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR422
 
Authors :  S. Vorobiev, M. Su, S. Bjelic, Y. Kipnis, L. Wang, S. Sahdev, R. Xiao, M. M S. Kogan, D. Baker, J. K. Everett, T. B. Acton, G. T. Montelione, J. F. Hu L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  12 Jul 13  (Deposition) - 07 Aug 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Engineered Protein, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, M. Su, S. Bjelic, Y. Kipnis, L. Wang, S. Sahdev, R. Xiao, M. Maglaqui, S. Kogan, D. Baker, J. K. Everett, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Engineered Protein Or422.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENGINEERED PROTEIN OR422
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: OR422-29.1
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector: PET29B+
    Expression System Vector Type: PLASMID
    Organism Scientific: ARTIFICIAL GENE
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1CD6Ligand/IonCADMIUM ION
2CL5Ligand/IonCHLORIDE ION
3MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:143 , SER A:214 , GLU A:218 , CL A:307 , HOH A:531BINDING SITE FOR RESIDUE CD A 301
02AC2SOFTWAREGLU A:68 , GLU A:188 , HOH A:533 , HOH A:557BINDING SITE FOR RESIDUE CD A 302
03AC3SOFTWAREASP A:183 , GLU A:185 , CL A:309 , HOH A:554 , HOH A:595BINDING SITE FOR RESIDUE CD A 303
04AC4SOFTWAREASP A:65BINDING SITE FOR RESIDUE CD A 304
05AC5SOFTWAREASP A:162 , ASP A:165 , HOH A:612BINDING SITE FOR RESIDUE CD A 305
06AC6SOFTWAREGLU A:147BINDING SITE FOR RESIDUE CD A 306
07AC7SOFTWAREGLU A:143 , LYS A:191 , GLY A:212 , ILE A:213 , SER A:214 , GLU A:218 , CD A:301 , CL A:308BINDING SITE FOR RESIDUE CL A 307
08AC8SOFTWAREGLY A:212 , ILE A:213 , ALA A:233 , CL A:307 , HOH A:501BINDING SITE FOR RESIDUE CL A 308
09AC9SOFTWARELYS A:71 , SER A:102 , CD A:303BINDING SITE FOR RESIDUE CL A 309
10BC1SOFTWARELYS A:245BINDING SITE FOR RESIDUE CL A 310
11BC2SOFTWAREGLU A:147 , ILE A:189 , LYS A:191 , HOH A:608BINDING SITE FOR RESIDUE CL A 311

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LNY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LNY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LNY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LNY)

(-) Exons   (0, 0)

(no "Exon" information available for 4LNY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains d4lnya_ A: automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh.............hhhhhhhhhhhh.....eeee............hhhhhhhhhh....eeeee........hhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh..eeeee.........hhhhhhhhhhh.....eeeee....hhhhhhhhhhh...eee...hhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lny A   2 PRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIAEYKRKDPSGLDVERDPIEYAKFmERYAVGLFISTEEKYFNGSYETLRKIASSVSIPILmYDFIVKESQIDDAYNLGADTVALIVKILTERELESLLEYARSYGmEPLIIINDENDLDIALRIGARFIGIAARDWETGEINKENQRKLISmIPSNVVKVAKEGISERNEIEELRKLGVNAFVTASGSLmRNPEKIKELIE 249
                                    11        21        31        41        51        61        71 |      81        91       101       111       121       131       141       151  |    161       171       181       191       201       211       221       231      |241        
                                                                                                  73-MSE                             109-MSE                                      154-MSE                                       200-MSE                               238-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LNY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LNY)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  4lny
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  TRPC_SULSO | Q06121
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPC_SULSO | Q06121: 1a53 1igs 1juk 1jul 1lbf 1lbl 2c3z 3nyz 3nz1 3tc6 3tc7 4a29 4a2r 4a2s 4iww 4ix0 4ou1 5an7 5aou 5k7j

(-) Related Entries Specified in the PDB File

3tc7 RELATED ID: OR422 RELATED DB: TARGETTRACK