4OU1 - JenaLib

Title :   CRYSTAL STRUCTURE OF A COMPUTATIONALLY DESIGNED RETRO-ALDOLASE COVALENTLY BOUND TO FOLDING PROBE 1 [(6-METHOXYNAPHTHALEN-2-YL) (OXIRAN-2-YL)METHANOL]

Authors :   G. Bhabha, X. Zhang, D. C. Ekiert

Date :   14 Feb 14 (Deposition) - 05 Mar 14 (Release) - 23 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.25

Chains :   Asym./Biol. Unit : A

Keywords :   Tim Barrel, Retro-Aldolase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Liu, Y. L. Tan, X. Zhang, G. Bhabha, D. C. Ekiert, J. C. Genereux, Y. Cho, Y. Kipnis, S. Bjelic, D. Baker, J. W. Kelly
Small Molecule Probes To Quantify The Functional Fraction O A Specific Protein In A Cell With Minimal Folding Equilibrium Shifts.
Proc. Natl. Acad. Sci. Usa V. 111 4449 2014
PubMed-ID: 24591605 | Reference-DOI: 10.1073/PNAS.1323268111

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:53 , ASP A:56 , PRO A:57 , SER A:58 , PHE A:89 , TYR A:110 , ARG A:182 , ASP A:183 , TRP A:184 , THR A:186 , GLY A:187 , LYS A:210 , GLU A:211 , BEZ A:302 , PO4 A:303	BINDING SITE FOR RESIDUE 2V7 A 301
2	AC2	SOFTWARE	TYR A:110 , ILE A:133 , ALA A:180 , TRP A:184 , LYS A:210 , 2V7 A:301 , HOH A:527	BINDING SITE FOR RESIDUE BEZ A 302
3	AC3	SOFTWARE	LYS A:53 , ASP A:56 , SER A:58 , ARG A:171 , ARG A:182 , GLY A:233 , SER A:234 , 2V7 A:301 , PO4 A:304 , HOH A:406	BINDING SITE FOR RESIDUE PO4 A 303
4	AC4	SOFTWARE	GLU A:143 , ARG A:171 , ARG A:182 , ILE A:189 , GLU A:211 , GLY A:212 , ILE A:213 , PO4 A:303 , HOH A:403 , HOH A:404 , HOH A:442	BINDING SITE FOR RESIDUE PO4 A 304

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh............hhhhhhhhhhhh....eeeee............hhhhhhhhhhh...eeeee........hhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhh...eeeee.........hhhhhhhhhhh.....eeeee....hhhhhhhhhhh...eee..hhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ou1 A   2 PRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIAEYKRKDPSGLDVERDPIEYAKFMERYAVGLFISTEEKYFNGSYETLRKIASSVSIPILMYDFIVKESQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIIINDENDLDIALRIGARFIGIAARDWETGEINKENQRKLISMIPSNVVKVAKEGISERNEIEELRKLGVNAFLIGSSLMRNPEKIKELIE 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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	4ou1
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