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(-) Description

Title :  ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH)OXYGENASE AND TPR DOMAINS IN COMPLEX WITH MANGANESE, N-OXALYLGLYCINE AND CYCLIC PEPTIDE SUBSTRATE MIMIC OF FACTOR X
 
Authors :  M. A. Mcdonough, I. Pfeffer, M. Munzel
Date :  17 May 16  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (1x)
Keywords :  2-Oxoglutarate Dependent Oxygenase, Aspartyl/Asparaginyl Beta- Hydroxylase, Egf-Like Domain Hydroxylase, Double Stranded Beta- Helix, Tetratricopeptide Repeat, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Pfeffer, T. Krojer, G. Kochan, N. Kershaw, K. Hewitson, L. Mcneill, H. Kramer, S. Jensen, P. Taylor, P. Handford, U. Oppermann, C. J. Schofield, M. A. Mcdonough
Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase And Tpr Domains In Complex With Manganese, N-Oxalylglycine And Factor X Substrate Peptide Fragment
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE
    Chains: A, C
    EC Number: 1.14.11.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-28A(+)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ASPH, BAH
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- ASPARTATE BETA-DIOXYGENASE
 
Molecule 2 - CYCLIC PEPTIDE MIMICK OF FACTOR X
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-28A(+)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: NOTE: R-ALA THIOETHER LINKAGE (ACA) INSERTED BETWEEN ALA 253 AMIDE AND THE SIDE CHAIN THIOL OF CYS 262 FORMING A STABLE SYNTHETIC CYCLIC PEPTIDE WHICH IS A SUBSTRATE FOR ASPH

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1AYA1Mod. Amino AcidN-ACETYLALANINE
2MN2Ligand/IonMANGANESE (II) ION
3OGA2Ligand/IonN-OXALYLGLYCINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1AYA1Mod. Amino AcidN-ACETYLALANINE
2MN-1Ligand/IonMANGANESE (II) ION
3OGA1Ligand/IonN-OXALYLGLYCINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1AYA-1Mod. Amino AcidN-ACETYLALANINE
2MN-1Ligand/IonMANGANESE (II) ION
3OGA1Ligand/IonN-OXALYLGLYCINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:679 , HIS A:725 , OGA A:802 , HOH A:946 , ASP B:255binding site for residue MN A 801
2AC2SOFTWARETRP A:625 , SER A:668 , MET A:670 , HIS A:679 , ARG A:688 , HIS A:690 , HIS A:725 , ARG A:735 , ILE A:737 , ILE A:739 , MN A:801 , HOH A:946 , ASP B:255binding site for residue OGA A 802
3AC3SOFTWAREHIS C:679 , HIS C:725 , OGA C:802 , HOH C:965 , HOH C:985binding site for residue MN C 801
4AC4SOFTWARETRP C:625 , SER C:668 , MET C:670 , HIS C:679 , ARG C:688 , HIS C:690 , PHE C:719 , HIS C:725 , ARG C:735 , ILE C:737 , MN C:801 , HOH C:965binding site for residue OGA C 802
5AC5SOFTWAREGLU A:617 , GLN A:664 , PRO A:682 , ARG A:686 , ILE A:758 , HOH A:922 , ASP B:255 , GLY B:256 , LEU B:257 , GLY B:258 , GLU B:259 , CYS B:262binding site for Di-peptide AYA B 253 and LYS B 254
6AC6SOFTWARETYR A:565 , PRO A:682 , ILE A:758 , LYS B:254 , GLY B:256 , LEU B:257 , GLY B:258 , GLU B:259 , THR B:261 , THR B:263binding site for Di-peptide AYA B 253 and CYS B 262

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:641 -A:648
2C:641 -C:648

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JZZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JZZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JZZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5JZZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee.....eee..eeeeeeee..eehhhhhh.hhhhhhhhh.hhhhhh....eeeeeee...eeeeee......eeeeeeeee.....eeeee..eee......eeee.....eeeee.....eeeeeeeee....hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jzz A 330 KPKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI 758
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749         


Chain B from PDB  Type:PROTEIN  Length:17
                                                 
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ................. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                 5jzz B 253 aKDGLGEYTCTSLEGFE 269
                            |      262       
                          253-AYA            


Chain C from PDB  Type:PROTEIN  Length:428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhhh.....................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee.....eee..eeeeeeee..eehhhhhhhhhhhhhhhhhhhhhhh....eeeeeee...eeeeee......eeeeeeeee.....eeeee..eee......eeee.....eeeee.....eeeeeeeee....hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jzz C 331 PKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI 758
                                   340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JZZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JZZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JZZ)

(-) Gene Ontology  (52, 52)

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  ASPH_HUMAN | Q12797
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UniProtKB/Swiss-Prot
        ASPH_HUMAN | Q12797: 5apa 5jqy 5jtc 5jz6 5jz8 5jza 5jzu

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