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(-) Description

Title :  ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH)OXYGENASE AND TPR DOMAINS IN COMPLEX WITH MANGANESE AND N-OXALYLGLYCINE
 
Authors :  M. A. Mcdonough, I. Pfeffer
Date :  16 May 16  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A
Keywords :  2-Oxoglutarate Dependent Oxygenase, Aspartyl/Asparaginyl Beta- Hydroxylase, Egf-Like Domain Hydroxylase, Double Stranded Beta- Helix, Tetratricopeptide Repeat, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Pfeffer, T. Krojer, G. Kochan, N. Kershaw, K. Hewitson, L. Mcneill, H. Kramer, S. Jensen, P. Taylor, P. Handford, U. Oppermann, C. J. Schofield, M. A. Mcdonough
Aspartyl/Asparaginyl Beta-Hydroxylase (Asph)Oxygenase And Tpr Domains In Complex With Manganese, N-Oxalylglycine And Factor X Substrate Peptide Fragment
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE
    Chains: A
    EC Number: 1.14.11.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-28A(+)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ASPH, BAH
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- ASPARTATE BETA-DIOXYGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MN1Ligand/IonMANGANESE (II) ION
3OGA1Ligand/IonN-OXALYLGLYCINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:679 , HIS A:725 , OGA A:806 , HOH A:939 , HOH A:1005binding site for residue MN A 801
2AC2SOFTWARESER A:455 , ASN A:458 , ASP A:459 , PRO A:520 , HOH A:931binding site for residue GOL A 802
3AC3SOFTWARETYR A:544 , TRP A:560 , GOL A:804binding site for residue GOL A 803
4AC4SOFTWARETRP A:560 , ASN A:706 , GOL A:803binding site for residue GOL A 804
5AC5SOFTWARELEU A:466 , ARG A:526binding site for residue GOL A 805
6AC6SOFTWARETRP A:625 , SER A:668 , MET A:670 , HIS A:679 , ARG A:688 , HIS A:690 , HIS A:725 , VAL A:727 , ARG A:735 , ILE A:739 , MN A:801binding site for residue OGA A 806

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:641 -A:648

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JZA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JZA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JZA)

(-) Exons   (0, 0)

(no "Exon" information available for 5JZA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee.hhh.eee..eeeeeeee..eehhhhhh.hhhhhhhhh.hhhhhh....eeeeeee...eeeeee......eeeeeeeee.....eeeee..eee......eeee.....eeeee.....eeeeeeeee....hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jza A 330 KPKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI 758
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JZA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JZA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JZA)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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  5jza
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  ASPH_HUMAN | Q12797
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  1.14.11.16
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ASPH_HUMAN | Q12797: 5apa 5jqy 5jtc 5jz6 5jz8 5jzu 5jzz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JZA)