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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ASPARTATE BETA-HYDROXYLASE ISOFORM A
 
Authors :  T. Krojer, G. Kochan, I. Pfeffer, M. A. Mcdonough, E. Pilka, V. Hozjan, C. Allerston, J. R. Muniz, A. Chaikuad, O. Gileadi, K. Kavanagh, F. Von C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann
Date :  15 Sep 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Krojer, G. Kochan, E. Pilka, V. Hozjan, C. Allerston, J. R. Muniz, A. Chaikuad, O. Gileadi, K. Kavanagh, F. Von Delft, C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann
Crystal Structure Of Human Aspartate Beta- Hydroxylase Isoform A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE
    Chains: A
    EC Number: 1.14.11.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 562-758
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ASPARTATE BETA-HYDROXYLASE, ASP BETA-HYDROXYLASE, PEPTIDE-A SPARTATE BETA-DIOXYGENASE, ASPARTATE BETA-HYDROXYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2LMR1Ligand/Ion(2S)-2-HYDROXYBUTANEDIOIC ACID
3NI1Ligand/IonNICKEL (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:679 , HIS A:725 , LMR A:1760 , HOH A:2056 , HOH A:2088BINDING SITE FOR RESIDUE NI A1759
2AC2SOFTWARETRP A:625 , SER A:668 , MET A:670 , HIS A:679 , ARG A:688 , HIS A:690 , HIS A:725 , ARG A:735 , ILE A:737 , ILE A:739 , NI A:1759 , HOH A:2055 , HOH A:2056BINDING SITE FOR RESIDUE LMR A1760
3AC3SOFTWARESER A:722BINDING SITE FOR RESIDUE EDO A1761

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:641 -A:648

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5APA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5APA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5APA)

(-) Exons   (0, 0)

(no "Exon" information available for 5APA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee.....eee..eeeeeeee..eehhhhhhhhhhhhhhhh.hhhhhh....eeeeeee...eeeeee......eeeeeeeee.....eeeee..eee......eeee.....eeeee.....eeeeeeeee....hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5apa A 563 SLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI 758
                                   572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5APA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5APA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5APA)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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  ASPH_HUMAN | Q12797
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 Related Entries

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UniProtKB/Swiss-Prot
        ASPH_HUMAN | Q12797: 5jqy 5jtc 5jz6 5jz8 5jza 5jzu 5jzz

(-) Related Entries Specified in the PDB File

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