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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ELL2 OCLLUDIN DOMAIN AND AFF4 PEPTIDE
 
Authors :  S. Qi, J. H. Hurley
Date :  11 May 16  (Deposition) - 08 Feb 17  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Occludin Domain, Hiv Transcription, P-Tefb, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Qi, Z. Li, U. Schulze-Gahmen, G. Stjepanovic, Q. Zhou, J. H. Hurley
Structural Basis For Ell2 And Aff4 Activation Of Hiv-1 Proviral Transcription.
Nat Commun V. 8 14076 2017
PubMed-ID: 28134250  |  Reference-DOI: 10.1038/NCOMMS14076

(-) Compounds

Molecule 1 - AF4/FMR2 FAMILY MEMBER 4
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AFF4, AF5Q31, MCEF, HSPC092
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALL1-FUSED GENE FROM CHROMOSOME 5Q31 PROTEIN,PROTEIN AF- 5Q31,MAJOR CDK9 ELONGATION FACTOR-ASSOCIATED PROTEIN
 
Molecule 2 - RNA POLYMERASE II ELONGATION FACTOR ELL2
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ELL2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5JW9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JW9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:36 -Pro A:37
2Ser B:604 -Pro B:605

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JW9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JW9)

(-) Exons   (0, 0)

(no "Exon" information available for 5JW9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 5jw9 A  14 SCVDEILKEmTHSWPPPLTAIHTPCKTEPSKFPFPT  49
                                    23        33        43      
                                    23-MSE                      


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5jw9 B 525 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARmETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRmIGEFDQQQAESW 639
                                   534       544       554       564       574       584       594       604       614       624  |    634     
                                                               562-MSE                                                          627-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JW9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JW9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JW9)

(-) Gene Ontology  (14, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ser B:604 - Pro B:605   [ RasMol ]  
    Thr A:36 - Pro A:37   [ RasMol ]  
 

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  ELL2_HUMAN | O00472
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AFF4_HUMAN | Q9UHB7: 4imy 4ogr 4or5 5l1z
        ELL2_HUMAN | O00472: 2e5n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JW9)