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(-) Description

Title :  CRYSTAL STRUCTURE OF P-TEFB COMPLEX WITH AFF4 AND TAT
 
Authors :  U. Schulze-Gahmen, T. Alber
Date :  16 Jan 14  (Deposition) - 07 May 14  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,K,L,M
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,K,L,M  (1x)
Keywords :  P-Tefb, Cyclin-Dependent Kinase 9, Cyclin Fold, Intrinsically Unstructured Aff4, Transcriptional Regulation At Hiv Promoter, Binds Tar, N-Terminal Acetylation Of Tat, Transferase-Viral Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Schulze-Gahmen, H. Lu, Q. Zhou, T. Alber
Aff4 Binding To Tat-P-Tefb Indirectly Stimulates Tar Recognition Of Super Elongation Complexes At The Hiv Promoter.
Elife V. 3 02375 2014
PubMed-ID: 24843025  |  Reference-DOI: 10.7554/ELIFE.02375

(-) Compounds

Molecule 1 - CYCLIN-DEPENDENT KINASE 9
    Chains: A, E, I
    EC Number: 2.7.11.22, 2.7.11.23
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 1-330
    Gene: CDK9, CDC2L4, TAK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: C-2K, CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 4, CELL DIVISION PROTEIN KINASE 9, SERINE/THREONINE-PROTEIN KINASE PITALRE, TAT-ASSOCIATED KINASE COMPLEX CATALYTIC SUBUNIT
 
Molecule 2 - CYCLIN-T1
    Chains: B, F, K
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 1-264
    Gene: CCNT1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYCT1, CYCLIN-T
 
Molecule 3 - AF4/FMR2 FAMILY MEMBER 4
    Chains: C, G, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-73
    Gene: AFF4, AF5Q31, MCEF, HSPC092
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALL1-FUSED GENE FROM CHROMOSOME 5Q31 PROTEIN, PROTEIN AF- 5Q31, MAJOR CDK9 ELONGATION FACTOR-ASSOCIATED PROTEIN
 
Molecule 4 - PROTEIN TAT
    Chains: D, H, M
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 1-57
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB3 ISOLATE)
    Organism Taxid: 11707
    Synonym: TRANSACTIVATING REGULATORY PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIKLM
Biological Unit 1 (1x): ABCD        
Biological Unit 2 (1x):     EFGH    
Biological Unit 3 (1x):         IKLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2ADN3Ligand/IonADENOSINE
3TPO3Mod. Amino AcidPHOSPHOTHREONINE
4ZN6Ligand/IonZINC ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ADN1Ligand/IonADENOSINE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ADN1Ligand/IonADENOSINE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ADN1Ligand/IonADENOSINE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE
4ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:25 , GLY A:28 , ALA A:46 , PHE A:105 , CYS A:106 , ASP A:109 , ALA A:153BINDING SITE FOR RESIDUE ADN A 401
2AC2SOFTWAREGLY E:26 , ALA E:46 , ASP E:104 , CYS E:106 , ASP E:109 , ALA E:153 , ASN E:154 , LEU E:156BINDING SITE FOR RESIDUE ADN E 401
3AC3SOFTWAREILE I:25 , GLY I:28 , ALA I:46 , ASP I:104 , CYS I:106 , ASP I:109 , ALA I:153 , ASN I:154 , LEU I:156 , ASP I:167BINDING SITE FOR RESIDUE ADN I 401
4AC4SOFTWARECYS D:22 , HIS D:33 , CYS D:34 , CYS D:37BINDING SITE FOR RESIDUE ZN D 101
5AC5SOFTWARECYS B:261 , CYS D:25 , CYS D:27 , CYS D:30BINDING SITE FOR RESIDUE ZN D 102
6AC6SOFTWARECYS H:22 , HIS H:33 , CYS H:34 , CYS H:37BINDING SITE FOR RESIDUE ZN H 101
7AC7SOFTWARECYS F:261 , CYS H:25 , CYS H:27 , CYS H:30BINDING SITE FOR RESIDUE ZN H 102
8AC8SOFTWARECYS M:22 , HIS M:33 , CYS M:34 , CYS M:37BINDING SITE FOR RESIDUE ZN M 101
9AC9SOFTWARECYS K:261 , CYS M:25 , CYS M:27 , CYS M:30BINDING SITE FOR RESIDUE ZN M 102

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1D:25 -D:27
2H:25 -H:27
3M:25 -M:27
4M:25 -M:30
5M:27 -M:30

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ala A:177 -Lys A:178
2Asp A:318 -Pro A:319
3Ser C:43 -Lys C:44
4Ala E:177 -Lys E:178
5Asp E:318 -Pro E:319
6Gln I:181 -Pro I:182
7Asp I:318 -Pro I:319
8Ser L:43 -Lys L:44

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OGR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OGR)

(-) Exons   (0, 0)

(no "Exon" information available for 4OGR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eeeeeeeee...eeeeeeee.....eeeeeee.........hhhhhhhhhhhhhh.......eeeeee....eeeeee...eehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee.................hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........hhhhh..............hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogr A   8 VECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYtNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLST 330
                                    17        27        37        47        57        67        77        87||     105       115       125       135       145       155       165       175       185|      195       205       215       225       235       245       255       265       275       285       295       305       315       325     
                                                                                                           88|                                                                                      186-TPO                                                                                                                                            
                                                                                                            97                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..hhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhee........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogr B   7 NNNKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIWNWRAC 261
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     


Chain C from PDB  Type:PROTEIN  Length:55
                                                                                       
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh........ee.....hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 4ogr C   4 EDRNVLRMKERERRNQEIPLFAEPYKVTSKEDKLSSRIQSMLGNYDEMKDFIGDR  69
                                    13       |34        44        54        64     
                                            21|                                    
                                             33                                    


Chain D from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhh.............hhhhhh.hhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 4ogr D   0 xMEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGR  49
                            |        9        19        29        39        49
                            0-ACE                                             


Chain E from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eeeeeee...eeeeee.....eeeeee....hhhhh.hhhhhhhhhhhhhh.......eeeeee....eeeeee...eehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee.................hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogr E   8 VECPFCDEVSKYEKLAKIGGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYtNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLST 330
                                    17        31        41        51        61        71        81      ||99       109       119       129       139       149       159       169       179      |189       199       209       219       229       239       249       259       269       279       289       299       309       319       329 
                                             26|                                                       88|                                                                                      186-TPO                                                                                                                                            
                                              31                                                        97                                                                                                                                                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhee........hhhhhh....hhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogr F   7 NNNKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIWNWRAC 261
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     


Chain G from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .....ee.....hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 4ogr G  34 LFAEPYKVTSKEDKLSSRIQSMLGNYDEMKDFIGDR  69
                                    43        53        63      


Chain H from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhh.............hhhhhh.hhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 4ogr H   0 xMEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGR  49
                            |        9        19        29        39        49
                            0-ACE                                             


Chain I from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eeeeeeeee...eeeeeeee.....eeeeeee.........hhhhhhhhhhhhhh.......eeeeee........eeeeee...eehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee.................hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogr I   8 VECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYtNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLST 330
                                    17        27        37        47        57        67        77        87   ||  101       111       121       131       141       151       161       171       181    |  191       201       211       221       231       241       251       261       271       281       291       301       311       321         
                                                                                                              91|                                                                                       186-TPO                                                                                                                                            
                                                                                                               96                                                                                                                                                                                                                                          


Chain K from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhee........hhhhhh....hhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogr K   7 NNNKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIWNWRAC 261
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     


Chain L from PDB  Type:PROTEIN  Length:54
                                                                                      
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.......ee.....hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 4ogr L   4 EDRNVLRMKERERRNQEILFAEPYKVTSKEDKLSSRIQSMLGNYDEMKDFIGDR  69
                                    13       |35        45        55        65    
                                            21|                                   
                                             34                                   


Chain M from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhh.............hhhhhh.hhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 4ogr M   0 xMEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGR  49
                            |        9        19        29        39        49
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OGR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OGR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OGR)

(-) Gene Ontology  (74, 103)

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  4ogr
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  AFF4_HUMAN | Q9UHB7
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  CCNT1_HUMAN | O60563
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  CDK9_HUMAN | P50750
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TAT_HV1H3 | P69698
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  2.7.11.22
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    Pathway: KEGG | MetaCyc
  2.7.11.23
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
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    Disease Information: OMIM
 
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    Age Related Information: GenAge

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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
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  AFF4_HUMAN | Q9UHB7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  CCNT1_HUMAN | O60563
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  CDK9_HUMAN | P50750
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  TAT_HV1H3 | P69698
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AFF4_HUMAN | Q9UHB7: 4imy 4or5 5jw9 5l1z
        CCNT1_HUMAN | O60563: 2pk2 3blh 3blq 3blr 3lq5 3mi9 3mia 3my1 3tn8 3tnh 3tni 4bcf 4bcg 4bch 4bci 4bcj 4ec8 4ec9 4imy 4or5 5l1z
        CDK9_HUMAN | P50750: 1pf6 3blh 3blq 3blr 3lq5 3mi9 3mia 3my1 3tn8 3tnh 3tni 4bcf 4bcg 4bch 4bci 4bcj 4ec8 4ec9 4imy 4or5 5l1z

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4OGR)