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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG
 
Authors :  C. Hou, O. V. Tsodikov
Date :  11 May 16  (Deposition) - 14 Sep 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Keywords :  Transcription, Dna Binding, Cancer, Ewing Sarcoma, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Hou, S. Weidenbach, K. E. Cano, Z. Wang, P. Mitra, D. N. Ivanov, J. Rohr, O. V. Tsodikov
Structures Of Mithramycin Analogues Bound To Dna And Implications For Targeting Transcription Factor Fli1.
Nucleic Acids Res. V. 44 8990 2016
PubMed-ID: 27587584  |  Reference-DOI: 10.1093/NAR/GKW761

(-) Compounds

Molecule 1 - FRIEND LEUKEMIA INTEGRATION 1 TRANSCRIPTION FACTOR
    Chains: A, D, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)-RIL
    Expression System Taxid: 469008
    Gene: FLI1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTO-ONCOGENE FLI-1,TRANSCRIPTION FACTOR ERGB
 
Molecule 2 - DNA (5'-D(*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*G)-3')
    Chains: B, E, H
    Engineered: YES
    Organism Scientific: ENDOTHIA GYROSA
    Organism Taxid: 40263
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*C)-3')
    Chains: C, F, I
    Engineered: YES
    Organism Scientific: ENDOTHIA GYROSA
    Organism Taxid: 40263
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (1x): ABC      
Biological Unit 2 (1x):    DEF   
Biological Unit 3 (1x):       GHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PO4-1Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS D:310 , LYS D:354 , ARG D:355binding site for residue PO4 D 401
2AC2SOFTWARESER A:294binding site for residue GOL G 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JVT)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5JVT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhhh....hhhhhhhhhhhh.....eee......eeeehhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5jvt A 279 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPT 374
                                   288       298       308       318       328       338       348       358       368      


Chain B from PDB  Type:DNA  Length:11
                                           
                 5jvt B   1 GACCGGAAGTG  11
                                    10 


Chain C from PDB  Type:DNA  Length:11
                                           
                 5jvt C  14 CACTTCCGGTC  24
                                    23 


Chain D from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeeehhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5jvt D 279 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQP 371
                                   288       298       308       318       328       338       348       358       368   


Chain E from PDB  Type:DNA  Length:11
                                           
                 5jvt E   1 GACCGGAAGTG  11
                                    10 


Chain F from PDB  Type:DNA  Length:11
                                           
                 5jvt F  14 CACTTCCGGTC  24
                                    23 


Chain G from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhh.....eee......eeeehhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5jvt G 279 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQP 371
                                   288       298       308       318       328       338       348       358       368   


Chain H from PDB  Type:DNA  Length:11
                                           
                 5jvt H   1 GACCGGAAGTG  11
                                    10 


Chain I from PDB  Type:DNA  Length:11
                                           
                 5jvt I  14 CACTTCCGGTC  24
                                    23
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JVT)

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(-) Gene Ontology  (20, 20)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLI1_HUMAN | Q01543: 1fli 1x66 2ytu 5e8g 5e8i

(-) Related Entries Specified in the PDB File

5jvw 5jw0 5jw2