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(-) Description

Title :  STRUCTURE OF P450 2B4 F202W MUTANT
 
Authors :  H. -H. Jang, J. R. Halpert, M. B. Shah
Date :  18 Mar 16  (Deposition) - 08 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A
Keywords :  Cytochrome P450 2B4, Monooxygenase, Oxidoreductase, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. B. Shah, H. H. Jang, P. R. Wilderman, D. Lee, S. Li, Q. Zhang, C. D. Stout, J. R. Halpert
Effect Of Detergent Binding On Cytochrome P450 2B4 Structur As Analyzed By X-Ray Crystallography And Deuterium-Exchange Mass Spectrometry.
Biophys. Chem. V. 216 1 2016
PubMed-ID: 27280734  |  Reference-DOI: 10.1016/J.BPC.2016.05.007

(-) Compounds

Molecule 1 - CYTOCHROME P450 2B4
    Chains: A
    EC Number: 1.14.14.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PKK
    Expression System Strain: TOPP3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 30-491
    Gene: CYP2B4
    Mutation: YES
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: CYPIIB4,CYTOCHROME P450 ISOZYME 2,CYTOCHROME P450 LM2, CYTOCHROME P450 TYPE B0,CYTOCHROME P450 TYPE B1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
132M1Ligand/Ion3,6,9,12,15,18-HEXAOXAHEXACOSAN-1-OL
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:98 , VAL A:113 , ILE A:114 , TRP A:121 , ARG A:125 , ILE A:179 , ALA A:298 , GLY A:299 , THR A:302 , THR A:303 , THR A:306 , ILE A:363 , VAL A:367 , HIS A:369 , LEU A:392 , PRO A:428 , PHE A:429 , SER A:430 , ARG A:434 , CYS A:436 , LEU A:437 , GLY A:438 , ILE A:441 , ALA A:442 , 32M A:502 , HOH A:647binding site for residue HEM A 501
2AC2SOFTWARELEU A:43 , MET A:46 , LEU A:51 , GLN A:215 , LEU A:219 , PHE A:297 , ALA A:298 , THR A:302 , ILE A:363 , GLY A:366 , HEM A:501binding site for residue 32M A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IUT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Met A:46 -Asp A:47

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IUT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IUT)

(-) Exons   (0, 0)

(no "Exon" information available for 5IUT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.......ee.....hhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh................hhhhh..hhhhhhhhhhhhhhhhhhheeee...hhhhh................eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iut A  29 KLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLWFQSFSLISSFSSQVFELFSGFLKYFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRGVGNVPPSYQIRFLARH 492
                                    38        48        58        68        78        88        98       108       118       128      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  ||   482       492
                                                                                                                                    135|                                                                                                                                                                                                                                                                                                                                            473|                
                                                                                                                                     138                                                                                                                                                                                                                                                                                                                                             476
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IUT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IUT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IUT)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CP2B4_RABIT | P00178: 1po5 1suo 2bdm 2q6n 3g5n 3g93 3kw4 3me6 3mvr 3r1a 3r1b 3tk3 3tmz 3uas 4h1n 4jlt 4mgj 5em4 5iuz

(-) Related Entries Specified in the PDB File

1po5 THE SAME PROTEIN IN A LIGAND FREE OPEN CONFORMATION
1suo THE SAME PROTEIN COMPLEXED WITH 4-(4-CHLOROPHENYL)IMIDAZOLE
2bdm THE SAME PROTEIN COMPLEXED WITH BIFONAZOLE
2q6n THE SAME PROTEIN COMPLEXED WITH 1-(4-CHLOROPHENYL)IMIDAZOLE
3g5n THE SAME PROTEIN COMPLEXED WITH 1-BIPHENYL-4-METHYL-1H- IMIDAZOLE (TRIPLE LIGAND OCCUPANCY)
3g93 THE SAME PROTEIN COMPLEXED WITH 1-BIPHENYL-4-METHYL-1H- IMIDAZOLE (SINGLE LIGAND OCCUPANCY)
3kw4 THE SAME PROTEIN COMPLEXED WITH TICLOPIDINE
3me6 THE SAME PROTEIN COMPLEXED WITH CLOPIDOGREL
3mvr THE SAME PROTEIN IN A LIGAND FREE CLOSED CONFORMATION
3r1a THE SAME PROTEIN COMPLEXED WITH TERT-BUTYLPHENYLACETYLENE (CLOSED CONFORMATION)
3r1b THE SAME PROTEIN COMPLEXED WITH TERT-BUTYLPHENYLACETYLENE (OPEN CONFORMATION)
3tk3 P450 2B4 L437A MUTANT COMPLEXED WITH 4-(4-CHLOROPHENYL) IMIDAZOLE
3tmz THE SAME PROTEIN COMPLEXED WITH AMLODIPINE
3uas THE SAME PROTEIN COMPLEXED WITH 9-ETHYNYLPHENANTHRENE
4h1n P450 2B4 F297A MUTANT COMPLEXED WITH CLOPIDOGREL
4jlt THE SAME PROTEIN COMPLEXED WITH PAROXETINE
5em4 P450 2B4 F244W MUTANT
5iuz