3G5N - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   TRIPLE LIGAND OCCUPANCY CRYSTAL STRUCTURE OF CYTOCHROME P450 2B4 IN COMPLEX WITH THE INHIBITOR 1-BIPHENYL-4-METHYL-1H-IMIDAZOLE

Authors :   S. C. Gay, L. Sun, K. Maekawa, J. R. Halpert, C. D. Stout

Date :   05 Feb 09 (Deposition) - 12 May 09 (Release) - 09 Jun 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A  (1x)
Biol. Unit 3: B  (1x)
Biol. Unit 4: C  (1x)
Biol. Unit 5: D  (1x)

Keywords :   P450, Cytochrome P450 2B4, Monooxygenase, Oxidoreductase, Membrane Protein, Cyp 2B4, Cyp Lm2, Endoplasmic Reticulum, Heme, Iron, Membrane, Metal-Binding, Microsome, Phosphoprotein, Polymorphism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. C. Gay, L. Sun, K. Maekawa, J. R. Halpert, C. D. Stout
Crystal Structures Of Cytochrome P450 2B4 In Complex With The Inhibitor 1-Biphenyl-4-Methyl-1H-Imidazole: Ligand-Induced Structural Response Through Alpha-Helical Repositioning.
Biochemistry V. 48 4762 2009
PubMed-ID: 19397311 | Reference-DOI: 10.1021/BI9003765
(for further references see the PDB file header)

Molecule 1 - CYTOCHROME P450 2B4
	Chains	:	A, B, C, D
	EC Number	:	1.14.14.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PKK
	Expression System Strain	:	TOPP3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CYP2B4
	Mutation	:	YES
	Organism Common	:	EUROPEAN RABBIT,JAPANESE WHITE RABBIT,DOMESTIC RABBIT,RABBITS
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986
	Synonym	:	CYPIIB4, P450-LM2, ISOZYME 2, P450 TYPES B0 AND B1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A
Biological Unit 3 (1x)	:		B
Biological Unit 4 (1x)	:			C
Biological Unit 5 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 20)

No.	Name	Count	Type	Full Name
1	CM5	4	Ligand/Ion	5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	PB2	12	Ligand/Ion	1-(BIPHENYL-4-YLMETHYL)-1H-IMIDAZOLE

Biological Unit 1 (3, 20)

No.	Name	Count	Type	Full Name
1	CM5	4	Ligand/Ion	5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	PB2	12	Ligand/Ion	1-(BIPHENYL-4-YLMETHYL)-1H-IMIDAZOLE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	CM5	1	Ligand/Ion	5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	PB2	2	Ligand/Ion	1-(BIPHENYL-4-YLMETHYL)-1H-IMIDAZOLE

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	CM5	1	Ligand/Ion	5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	PB2	4	Ligand/Ion	1-(BIPHENYL-4-YLMETHYL)-1H-IMIDAZOLE

Biological Unit 4 (3, 5)

No.	Name	Count	Type	Full Name
1	CM5	1	Ligand/Ion	5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	PB2	3	Ligand/Ion	1-(BIPHENYL-4-YLMETHYL)-1H-IMIDAZOLE

Biological Unit 5 (3, 5)

No.	Name	Count	Type	Full Name
1	CM5	1	Ligand/Ion	5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	PB2	3	Ligand/Ion	1-(BIPHENYL-4-YLMETHYL)-1H-IMIDAZOLE

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:98 , TRP A:121 , ARG A:125 , PHE A:296 , GLY A:299 , THR A:300 , THR A:302 , THR A:303 , GLN A:357 , ILE A:363 , VAL A:367 , HIS A:369 , PRO A:428 , PHE A:429 , SER A:430 , ARG A:434 , CYS A:436 , LEU A:437 , GLY A:438 , PB2 A:501 , HOH A:525	BINDING SITE FOR RESIDUE HEM A 500
02	AC2	SOFTWARE	ALA A:298 , GLY A:299 , THR A:302 , VAL A:367 , HEM A:500 , PHE B:217 , PHE B:223 , LYS B:225	BINDING SITE FOR RESIDUE PB2 A 501
03	AC3	SOFTWARE	LEU A:70 , ARG A:73 , GLU A:387 , ILE B:101 , PHE B:223 , LEU B:224 , PB2 B:502 , HOH B:525	BINDING SITE FOR RESIDUE PB2 A 503
04	AC4	SOFTWARE	ARG A:98 , ILE A:114 , ASN A:117 , TRP A:121 , LEU A:288	BINDING SITE FOR RESIDUE CM5 A 504
05	AC5	SOFTWARE	TYR A:69 , LEU A:70 , VAL A:477 , PB2 A:503 , LEU B:224 , LYS B:225 , PRO B:228 , THR B:230	BINDING SITE FOR RESIDUE PB2 B 502
06	AC6	SOFTWARE	ARG B:98 , TRP B:121 , ARG B:125 , PHE B:296 , GLY B:299 , THR B:300 , THR B:302 , THR B:303 , THR B:306 , GLN B:357 , ILE B:363 , VAL B:367 , HIS B:369 , PRO B:428 , PHE B:429 , SER B:430 , ARG B:434 , CYS B:436 , LEU B:437 , GLY B:438 , HOH B:499 , PB2 B:501 , HOH B:520	BINDING SITE FOR RESIDUE HEM B 500
07	AC7	SOFTWARE	PHE A:217 , PHE A:223 , ALA B:298 , GLY B:299 , THR B:302 , VAL B:367 , PRO B:368 , HEM B:500	BINDING SITE FOR RESIDUE PB2 B 501
08	AC8	SOFTWARE	LYS A:225 , PHE A:227 , PRO A:228 , LEU B:43 , LEU B:51 , TYR B:69 , LEU B:70 , PRO B:368 , PHE B:389 , VAL B:477 , PB2 B:503 , HOH B:535	BINDING SITE FOR RESIDUE PB2 B 496
09	AC9	SOFTWARE	LEU A:224 , ARG B:73 , GLU B:387 , PB2 B:496	BINDING SITE FOR RESIDUE PB2 B 503
10	BC1	SOFTWARE	PHE A:220 , ARG B:98 , ILE B:114 , ASN B:117 , ARG B:120 , LEU B:288	BINDING SITE FOR RESIDUE CM5 B 504
11	BC2	SOFTWARE	ARG C:98 , TRP C:121 , ARG C:125 , PHE C:296 , GLY C:299 , THR C:302 , THR C:303 , ILE C:363 , VAL C:367 , HIS C:369 , PRO C:428 , PHE C:429 , SER C:430 , ARG C:434 , CYS C:436 , LEU C:437 , GLY C:438 , PB2 C:501 , HOH C:510 , PHE D:220	BINDING SITE FOR RESIDUE HEM C 500
12	BC3	SOFTWARE	ALA C:298 , GLY C:299 , THR C:302 , VAL C:367 , PRO C:368 , HEM C:500 , PHE D:217 , PHE D:223	BINDING SITE FOR RESIDUE PB2 C 501
13	BC4	SOFTWARE	LEU C:43 , LEU C:51 , TYR C:69 , LEU C:70 , VAL C:477 , PB2 C:503 , LEU D:224 , LYS D:225 , PHE D:227 , PRO D:228 , THR D:230	BINDING SITE FOR RESIDUE PB2 C 502
14	BC5	SOFTWARE	ARG C:73 , GLU C:387 , PB2 C:502 , PHE D:223 , LEU D:224	BINDING SITE FOR RESIDUE PB2 C 503
15	BC6	SOFTWARE	VAL C:39 , ARG D:98 , ASN D:117 , TRP D:121 , LEU D:288 , HOH D:513	BINDING SITE FOR RESIDUE CM5 D 504
16	BC7	SOFTWARE	ARG C:98 , ILE C:114 , ASN C:117 , LEU C:288 , PHE D:220	BINDING SITE FOR RESIDUE CM5 C 504
17	BC8	SOFTWARE	ARG D:98 , TRP D:121 , ARG D:125 , PHE D:296 , GLY D:299 , THR D:302 , THR D:303 , ILE D:363 , VAL D:367 , HIS D:369 , PRO D:428 , PHE D:429 , SER D:430 , ARG D:434 , CYS D:436 , LEU D:437 , GLY D:438 , PB2 D:501	BINDING SITE FOR RESIDUE HEM D 500
18	BC9	SOFTWARE	PHE C:217 , PHE C:223 , ALA D:298 , GLY D:299 , THR D:302 , VAL D:367 , PRO D:368 , HEM D:500	BINDING SITE FOR RESIDUE PB2 D 501
19	CC1	SOFTWARE	PRO C:228 , THR C:230 , LEU D:43 , TYR D:69 , LEU D:70 , PHE D:365 , VAL D:477 , PB2 D:503	BINDING SITE FOR RESIDUE PB2 D 502
20	CC2	SOFTWARE	LEU C:224 , LEU D:70 , ARG D:73 , GLU D:387 , PHE D:389 , PB2 D:502	BINDING SITE FOR RESIDUE PB2 D 503

(no "SS Bond" information available for 3G5N)

Asymmetric Unit

No.	Residues
1	Pro A:258	-	Ser A:259
2	Pro B:258	-	Ser B:259
3	Pro C:258	-	Ser C:259
4	Asp D:134	-	Phe D:135
5	Pro D:258	-	Ser D:259

Asymmetric Unit (5, 20)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CP2B4_RABIT_001 *	V	39	I	CP2B4_RABIT	---	---	A/B/C/D	V	39	I
2	UniProt	VAR_CP2B4_RABIT_002 *	I	174	V	CP2B4_RABIT	---	---	A/B/C/D	I	174	V
3	UniProt	VAR_CP2B4_RABIT_003 *	L	290	I	CP2B4_RABIT	---	---	A/B/C/D	L	290	I
4	UniProt	VAR_CP2B4_RABIT_004 *	M	314	L	CP2B4_RABIT	---	---	A/B/C/D	M	314	L
5	UniProt	VAR_CP2B4_RABIT_005 *	L	420	M	CP2B4_RABIT	---	---	A/B/C/D	L	420	M
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (5, 20)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CP2B4_RABIT_001 *	V	39	I	CP2B4_RABIT	---	---	A/B/C/D	V	39	I
2	UniProt	VAR_CP2B4_RABIT_002 *	I	174	V	CP2B4_RABIT	---	---	A/B/C/D	I	174	V
3	UniProt	VAR_CP2B4_RABIT_003 *	L	290	I	CP2B4_RABIT	---	---	A/B/C/D	L	290	I
4	UniProt	VAR_CP2B4_RABIT_004 *	M	314	L	CP2B4_RABIT	---	---	A/B/C/D	M	314	L
5	UniProt	VAR_CP2B4_RABIT_005 *	L	420	M	CP2B4_RABIT	---	---	A/B/C/D	L	420	M
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CP2B4_RABIT_001 *	V	39	I	CP2B4_RABIT	---	---	A	V	39	I
2	UniProt	VAR_CP2B4_RABIT_002 *	I	174	V	CP2B4_RABIT	---	---	A	I	174	V
3	UniProt	VAR_CP2B4_RABIT_003 *	L	290	I	CP2B4_RABIT	---	---	A	L	290	I
4	UniProt	VAR_CP2B4_RABIT_004 *	M	314	L	CP2B4_RABIT	---	---	A	M	314	L
5	UniProt	VAR_CP2B4_RABIT_005 *	L	420	M	CP2B4_RABIT	---	---	A	L	420	M
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CP2B4_RABIT_001 *	V	39	I	CP2B4_RABIT	---	---	B	V	39	I
2	UniProt	VAR_CP2B4_RABIT_002 *	I	174	V	CP2B4_RABIT	---	---	B	I	174	V
3	UniProt	VAR_CP2B4_RABIT_003 *	L	290	I	CP2B4_RABIT	---	---	B	L	290	I
4	UniProt	VAR_CP2B4_RABIT_004 *	M	314	L	CP2B4_RABIT	---	---	B	M	314	L
5	UniProt	VAR_CP2B4_RABIT_005 *	L	420	M	CP2B4_RABIT	---	---	B	L	420	M
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CP2B4_RABIT_001 *	V	39	I	CP2B4_RABIT	---	---	C	V	39	I
2	UniProt	VAR_CP2B4_RABIT_002 *	I	174	V	CP2B4_RABIT	---	---	C	I	174	V
3	UniProt	VAR_CP2B4_RABIT_003 *	L	290	I	CP2B4_RABIT	---	---	C	L	290	I
4	UniProt	VAR_CP2B4_RABIT_004 *	M	314	L	CP2B4_RABIT	---	---	C	M	314	L
5	UniProt	VAR_CP2B4_RABIT_005 *	L	420	M	CP2B4_RABIT	---	---	C	L	420	M
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CP2B4_RABIT_001 *	V	39	I	CP2B4_RABIT	---	---	D	V	39	I
2	UniProt	VAR_CP2B4_RABIT_002 *	I	174	V	CP2B4_RABIT	---	---	D	I	174	V
3	UniProt	VAR_CP2B4_RABIT_003 *	L	290	I	CP2B4_RABIT	---	---	D	L	290	I
4	UniProt	VAR_CP2B4_RABIT_004 *	M	314	L	CP2B4_RABIT	---	---	D	M	314	L
5	UniProt	VAR_CP2B4_RABIT_005 *	L	420	M	CP2B4_RABIT	---	---	D	L	420	M
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CP2B4_RABIT	429-438	4	A:429-438 B:429-438 C:429-438 D:429-438

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CP2B4_RABIT	429-438	4	A:429-438 B:429-438 C:429-438 D:429-438

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CP2B4_RABIT	429-438	1	A:429-438 - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CP2B4_RABIT	429-438	1	- B:429-438 - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CP2B4_RABIT	429-438	1	- - C:429-438 -

Biological Unit 5 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CP2B4_RABIT	429-438	1	- - - D:429-438

(no "Exon" information available for 3G5N)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:456
 aligned with CP2B4_RABIT | P00178 from UniProtKB/Swiss-Prot  Length:491

    Alignment length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          491  
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486    |  
          CP2B4_RABIT    27 HGRLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFPGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLAR--   -
               SCOP domains d3g5na_ A: Mammalian cytochrome p450 2b4                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3g5nA00 A:27-493 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhh...hhhhhhhhhhhhhh.eeeeee..eeeeeehhhhhhhhhhh.........hhhhh.hhhhhh.hhhhhhhhhhhhhhhhhh.....----..hhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeehhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh-------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh................hhhhh..hhhhhhhhhhhhhhhhhhheeee...hhhhh.................eeeee... Sec.struct. author
                 SAPs(SNPs) ------------I--------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------------------------------------------------------I-----------------------L---------------------------------------------------------------------------------------------------------M------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g5n A  27 KGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRD----KRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKYFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRMEKD-------FHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARHH 493
                                    36        46        56        66        76        86        96       106       116       126       | -  |    146       156       166       176       186       196       206       216       226       236       246       256       266        |-      |286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                                                                                     134  139                                                                                                                                     275     283

Chain B from PDB  Type:PROTEIN  Length:451
 aligned with CP2B4_RABIT | P00178 from UniProtKB/Swiss-Prot  Length:491

    Alignment length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         491 
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487   | 
          CP2B4_RABIT    28 GRLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFPGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLAR-   -
               SCOP domains d3g5nb_ B: Mammalian cytochrome p450 2b4                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 3g5nB00 B:28-492 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhh...hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.........hhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh----..hhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeehhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh----------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh................hhhhh..hhhhhhhhhhhhhhhhhhheeee...hhhhh.................eeeee.. Sec.struct. author
                 SAPs(SNPs) -----------I--------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------------------------------------------------------I-----------------------L---------------------------------------------------------------------------------------------------------M------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g5n B  28 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRD----KRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKYFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRME----------HHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARH 492
                                    37        47        57        67        77        87        97       107       117       127      |  - |     147       157       167       177       187       197       207       217       227       237       247       257       267     |   -      |287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487     
                                                                                                                                    134  139                                                                                                                                   273        284

Chain C from PDB  Type:PROTEIN  Length:452
 aligned with CP2B4_RABIT | P00178 from UniProtKB/Swiss-Prot  Length:491

    Alignment length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           491 
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485     | 
          CP2B4_RABIT    26 AHGRLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFPGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLAR-   -
               SCOP domains d3g5nc_ C: Mammalian cytochrome p450 2b4                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3g5nC00 C:26-492 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhh...hhhhhhhhhhhhhh.eeeeee..eeeeeehhhhhhhhhhh.........hhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhhhhh.----..hhhhhhhhhhhhhhhhhhhhh..ee.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhheeeeeeehhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh-----------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeee.hhhhhh...........hhhhh.................hhhhh..hhhhhhhhhhhhhhhhhhheeee...hhhhh.................eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------I--------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------------------------------------------------------I-----------------------L---------------------------------------------------------------------------------------------------------M------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g5n C  26 SKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRD----KRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKYFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRME-----------HQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARH 492
                                    35        45        55        65        75        85        95       105       115       125        |-   |   145       155       165       175       185       195       205       215       225       235       245       255       265       | -       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       
                                                                                                                                      134  139                                                                                                                                   273         285

Chain D from PDB  Type:PROTEIN  Length:451
 aligned with CP2B4_RABIT | P00178 from UniProtKB/Swiss-Prot  Length:491

    Alignment length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         491 
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487   | 
          CP2B4_RABIT    28 GRLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFPGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLAR-   -
               SCOP domains d3g5nd_ D: Mammalian cytochrome p450 2b4                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 3g5nD00 D:28-492 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhh...hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.........hhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.----.hhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhheeeeeeehhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh----------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhh.................hhhhh..hhhhhhhhhhhhhhhhhhheeee...hhhhh.................eeeee.. Sec.struct. author
                 SAPs(SNPs) -----------I--------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------------------------------------------------------I-----------------------L---------------------------------------------------------------------------------------------------------M------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g5n D  28 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDF----RSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKYFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDVYLLRME----------HHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARH 492
                                    37        47        57        67        77        87        97       107       117       127       | -  |    147       157       167       177       187       197       207       217       227       237       247       257       267     |   -      |287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487     
                                                                                                                                     135  140                                                                                                                                  273        284

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Cytochrome P450 (480)

Superfamily: Cytochrome P450 (480)

Family: Cytochrome P450 (323)

Protein domain: Mammalian cytochrome p450 2b4 (10)

Rabbit (Oryctolagus cuniculus) [TaxId: 9986] (10)

1a	d3g5na_	A:
1b	d3g5nd_	D:
1c	d3g5nb_	B:
1d	d3g5nc_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Cytochrome p450 (271)

Homologous Superfamily: Cytochrome p450 (271)

European rabbit,japanese white rabbit,domesticrabbit,rabbits (Oryctolagus cuniculus) (2)

1a	3g5nB00	B:28-492
1b	3g5nD00	D:28-492
1c	3g5nC00	C:26-492
1d	3g5nA00	A:27-493

(no "Pfam Domain" information available for 3G5N)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (CP2B4_RABIT | P00178)

molecular function
	GO:0070330	aromatase activity	Catalysis of the reduction of an aliphatic ring to yield an aromatic ring.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0031090	organelle membrane	A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle.

Asymmetric Unit
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	3g5n
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	1.14.14.1
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1po5	SAME PROTEIN, NO LIGAND
1suo	SAME PROTEIN COMPLEXED WITH 4-(4-CHLOROPHENYL)IMIDAZOLE
2bdm	SAME PROTEIN COMPLEXED WITH BIFONAZOLE
2q6n	SAME PROTEIN COMPLEXED WITH 1-(4-CHLOROPHENYL)IMIDAZOLE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

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