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(-) Description

Title :  CRYSTAL STRUCTURE OF M. TUBERCULOSIS MAZF-MT3 (RV1991C) IN COMPLEX WITH RNA
 
Authors :  T. J. Yen, R. G. Brennan
Date :  13 Jan 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,E  (1x)
Biol. Unit 2:  C,D,F  (1x)
Keywords :  Toxin-Antitoxin System, Mazf, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. J. Yen, R. G. Brennan
Crystal Structure Of M. Tuberculosis Mazf-Mt3 (Rv1991C) In Complex With Rna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDORIBONUCLEASE MAZF6
    Chains: A, B, C, D
    EC Number: 3.1.27.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAZF6, MAZF-MT3, RV1991C, MTCY39.28
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / H37RV)
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV
    Synonym: TOXIN MAZF6,MRNA INTERFERASE MAZF-MT3
 
Molecule 2 - RNA (5'-R(*AP*GP*UP*C)-D(P*U)-R(P*CP*CP*UP*UP*UP*C)-3')
    Chains: E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB  E 
Biological Unit 2 (1x):   CD F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1DU2Mod. Residue
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1DU-1Mod. Residue
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1DU-1Mod. Residue

(-) Sites  (0, 0)

(no "Site" information available for 5HK0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HK0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HK0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HK0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HK0)

(-) Exons   (0, 0)

(no "Exon" information available for 5HK0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee....eeeeeee..hhhhhhh...eeeeeeee...hhhhh...eeehhhhhh....eeeeeeeeeeee.hhh.eeeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5hk0 A   1 MVISRAEIYWADLGPPAKRRPVLVIQSDPYNASRLATVIAAVITSNTALAAMPGNVFLPATTTRLPRDSVVNVTAIVTLNKTDLTDRVGEVPASLMHEVDRGLRRVLDL 114
                                    10    ||  25        35        45        55        65        75        85        95       105         
                                         15|                                                                                             
                                          21                                                                                             


Chain B from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee....eeeeee..hhhhhhh...eeeeeeee.hhhhhhh...eeehhhhhh....eeeeeeeeeeee...eeeeeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5hk0 B   1 MVISRAEIYWADLPAKRRPVLVIQSDPYNASRLATVIAAVITSNTALAAMPGNVFLPATTTRLPRDSVVNVTAIVTLNKTDLTDRVGEVPASLMHEVDRGLRRVLDL 114
                                    10  ||    27        37        47        57        67        77        87        97       107       
                                       13|                                                                                             
                                        21                                                                                             


Chain C from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......eeeeee..hhhhhhhh..eeeeeeee...........eee..........eeeeeeeeeeee.hhhh.eeee.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5hk0 C   2 VISRAEIYWADLGPPPAKRRPVLVIQSDPYNASRLATVIAAVITSNTALAAMPGNVFLPATTTRLPRDSVVNVTAIVTLNKTDLTDRVGEVPASLMHEVDRGLRRVLDL 114
                                    11    ||  25        35        45        55        65        75        85        95       105         
                                         16|                                                                                             
                                          21                                                                                             


Chain D from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeee..hhhhhhhh..eeeeeeee...........eeehhhhhh....eeeeeeeeeeee.hhh..eeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5hk0 D   5 RAEIYWADLKRRPVLVIQSDPYNASRLATVIAAVITSNTALAAMPGNVFLPATTTRLPRDSVVNVTAIVTLNKTDLTDRVGEVPASLMHEVDRGLRRVLDL 114
                                    23        33        43        53        63        73        83        93       103       113 
                                   13|                                                                                           
                                    23                                                                                           


Chain E from PDB  Type:DNA/RNA  Length:5
                                     
                 5hk0 E   1 UCxCC   5
                              |  
                              3-DU


Chain F from PDB  Type:DNA/RNA  Length:2
                                  
                 5hk0 F   3 xC   4
                            | 
                            | 
                            3-DU
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HK0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HK0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HK0)

(-) Gene Ontology  (13, 13)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAZF6_MYCTU | P9WII3: 5hk3 5hkc

(-) Related Entries Specified in the PDB File

5hjz 5hk3 5hkc