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(-) Description

Title :  STRUCTURE OF M. TUBERCULOSIS MAZF-MT1 (RV2801C) IN COMPLEX WITH RNA
 
Authors :  T. J. Yen, R. G. Brennan
Date :  13 Jan 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Toxin-Antitoxin System, Mazf, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. J. Yen, R. G. Brennan
Structure Of M. Tuberculosis Mazf-Mt1 (Rv2801C) In Complex With Rna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDORIBONUCLEASE MAZF9
    ChainsA, B
    EC Number3.1.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneMAZF9, MAZF-MT1, RV2801C
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / H37RV)
    Organism Taxid83332
    StrainATCC 25618 / H37RV
    SynonymTOXIN MAZF9,MRNA INTERFERASE MAZF-MT1
 
Molecule 2 - RNA (5'-R(*CP*AP*UP*C)-D(P*U)-R(P*AP*CP*CP*UP*GP*A)-3')
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS
    Organism Taxid1773

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HJZ)

(-) Sites  (0, 0)

(no "Site" information available for 5HJZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HJZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:13 -Pro A:14
2Asp B:13 -Pro B:14

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HJZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HJZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5HJZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee...........eeeeee..hhhhhhhhhhhh..eeeeeeee.........eeee.........eeee.hhheeee...eeeeeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5hjz A   2 MRRGEIWQVDLDPARGSEANNQRPAVVVSNDRANATATRLGRGVITVVPVTSNIAKVYPFQVLLSATTGLQVDCKAQAEQIRSIATERLLRPIGRVSAAELAQLDEALKLHLDL 116
                                    11        21        31        41        51        61      ||72        82        92       102       112    
                                                                                             68|                                              
                                                                                              70                                              

Chain B from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee...........eeeeee..hhhhhhhhhhhh..eeeeeeee.........eeee.........eeee.hhheeee...eeeeeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5hjz B   0 AMMRRGEIWQVDLDPARGSEANNQRPAVVVSNDRANATATRLGRGVITVVPVTSNIAKVYPFQVLLSATTGLQVDCKAQAEQIRSIATERLLRPIGRVSAAELAQLDEALKLHLDL 116
                                     9        19        29        39        49        59        70        80        90       100       110      
                                                                                               68|                                              
                                                                                                70                                              

Chain C from PDB  Type:RNA  Length:4
                                    
                 5hjz C   1 ACCU   4

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HJZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HJZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HJZ)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:13 - Pro A:14   [ RasMol ]  
    Asp B:13 - Pro B:14   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5hk0 5hk3 5hkc