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(-) Description

Title :  CRYSTAL STRUCTURE OF M. TUBERCULOSIS MAZF-MT3 T52D-F62D MUTANT IN COMPLEX WITH 8-MER RNA
 
Authors :  T. J. Yen, R. G. Brennan
Date :  14 Jan 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.68
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Toxin-Antitoxin System, Mazf, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. J. Yen, R. G. Brennan
Crystal Structure Of M. Tuberculosis Mazf-Mt3 T52D-F62D Mutant In Complex With 8-Mer Rna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDORIBONUCLEASE MAZF6
    Chains: A, B
    EC Number: 3.1.27.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAZF6, MT2046
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN CDC 1551 / OSHKOSH)
    Organism Taxid: 83331
    Strain: CDC 1551 / OSHKOSH
    Synonym: TOXIN MAZF6,MRNA INTERFERASE MAZF6
 
Molecule 2 - RNA (5'-R(*GP*UP*C)-D(P*U)-R(P*CP*CP*UP*A)-3')
    Chains: C
    Engineered: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1DU1Mod. Residue

(-) Sites  (0, 0)

(no "Site" information available for 5HKC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HKC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HKC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HKC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HKC)

(-) Exons   (0, 0)

(no "Exon" information available for 5HKC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeee...........eeeeee..hhhhhhh...eeeeeeee.hhhhhhh...eeehhhhhh....eeeeeeeeeeee.hhheeeeee.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5hkc A   1 MVISRAEIYWADLGPPSGSQPAKRRPVLVIQSDPYNASRLATVIAAVITSNDALAAMPGNVDLPATTTRLPRDSVVNVTAIVTLNKTDLTDRVGEVPASLMHEVDRGLRRVLDL 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain B from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eeeeee..hhhhhh....eeeeeeeee.hhhhh....eeehhhhhh....eeeeeeeeeeee...eeeeeee.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 5hkc B   2 VISRAEIYWADLPPSGSQPAKRRPVLVIQSDPYNASRLATVIAAVITSNDALAAMPGNVDLPATTTRLPRDSVVNVTAIVTLNKTDLTDRVGEVPASLMHEVDRGLRRVLDL 114
                                    11 ||     22        32        42        52        62        72        82        92       102       112  
                                      13|                                                                                                   
                                       15                                                                                                   


Chain C from PDB  Type:DNA/RNA  Length:2
                                  
                 5hkc C   2 Cx   3
                             |
                             3-DU
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HKC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HKC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HKC)

(-) Gene Ontology  (13, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAZF6_MYCTU | P9WII3: 5hk0 5hk3

(-) Related Entries Specified in the PDB File

5hjz 5hk0 5hk3