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(-) Description

Title :  STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF HUMAN FK506-BINDING PROTEIN 3 / NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HT99A
 
Authors :  M. Sunnerhagen, T. Davis, A. Gutmanas, C. Fares, H. Ouyang, A. Lemak, Y. Li, J. Weigelt, C. Bountra, A. Edwards, C. H. Arrowsmith, S. Dhe- Paganon, Northeast Structural Genomics Consortium (Nesg), Structural Genomics Consortium (Sgc)
Date :  27 Feb 09  (Deposition) - 23 Jun 09  (Release) - 23 Jun 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Fkbp3-N, Isomerase, Nucleus, Phosphoprotein, Rotamase, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sunnerhagen
Structure Of The N-Terminal Domain Of Fk506-Binding Protein 3
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FK506-BINDING PROTEIN 3
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL-21(DE3) CODONPLUS
    Expression System Taxid: 562
    Expression System Vector: PET28ALIC
    Fragment: FKBP3-N NTERMINAL DOMAIN, RESIDUES 20-92
    Gene: FKBP25, FKBP3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, PPIASE, ROTAMASE, 25 KDA FKBP, FKBP-25, RAPAMYCIN-SELECTIVE 25 KDA IMMUNOPHILIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KFV)

(-) Sites  (0, 0)

(no "Site" information available for 2KFV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KFV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KFV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KFV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KFV)

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2bENST000003960622bENSE00001523752chr14:45603732-45603552181FKBP3_HUMAN1-36361A:20-5536
1.3ENST000003960623ENSE00000656524chr14:45600003-45599902102FKBP3_HUMAN37-70341A:56-8934
1.4ENST000003960624ENSE00000656523chr14:45599104-45598997108FKBP3_HUMAN71-106361A:90-923
1.5ENST000003960625ENSE00000656522chr14:45590823-45590688136FKBP3_HUMAN107-152460--
1.6ENST000003960626ENSE00000656521chr14:45590157-4559009068FKBP3_HUMAN152-174230--
1.7ENST000003960627ENSE00000656520chr14:45587328-4558723198FKBP3_HUMAN175-207330--
1.8ENST000003960628ENSE00001772352chr14:45585455-45584803653FKBP3_HUMAN207-224180--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
 aligned with FKBP3_HUMAN | Q00688 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:73
                                    10        20        30        40        50        60        70   
           FKBP3_HUMAN    1 MAAAVPQRAWTVEQLRSEQLPKKDIIKFLQEHGSDSFLAEHKLLGNIKNVAKTANKDHLVTAYNHLFETKRFK 73
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2b  PDB: A:20-55             Exon 1.3  PDB: A:56-89            1.4 Transcript 1
                  2kfv A 20 MAAAVPQRAWTVEQLRSEQLPKKDIIKFLQEHGSDSFLAEHKLLGNIKNVAKTANKDHLVTAYNHLFETKRFK 92
                                    29        39        49        59        69        79        89
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KFV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KFV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2KFV)

(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)
Chain A   (FKBP3_HUMAN | Q00688)
molecular function
    GO:0005528    FK506 binding    Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0061077    chaperone-mediated protein folding    The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

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UniProtKB/Swiss-Prot
        FKBP3_HUMAN | Q00688: 1pbk 2mph 5d75 5gpg

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