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(-) Description

Title :  STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-(METHYLAMINO)METHYL)PHENOXY)METHYL)QUINOLIN-2-AMINE
 
Authors :  J. K. Holden, T. L. Poulos
Date :  18 Jun 16  (Deposition) - 21 Sep 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Nitric Oxide Synthase, Oxidoreductase, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. K. Holden, M. C. Lewis, M. A. Cinelli, Z. Abdullatif, A. V. Pensa, R. B. Silverman, T. L. Poulos
Targeting Bacterial Nitric Oxide Synthase With Aminoquinoline-Based Inhibitors.
Biochemistry V. 55 5587 2016
PubMed-ID: 27607918  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00786

(-) Compounds

Molecule 1 - NITRIC OXIDE SYNTHASE OXYGENASE
    Atcc: 23857
    Chains: A
    EC Number: 1.14.13.165
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: NOSOXY-LIKE PROTEIN, NITRIC OXIDE SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

Asymmetric Unit (5, 6)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3H4B1Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
4HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
5M851Ligand/Ion7-[[3-(METHYLAMINOMETHYL)PHENOXY]METHYL]QUINOLIN-2-AMINE
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3H4B2Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
4HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
5M852Ligand/Ion7-[[3-(METHYLAMINOMETHYL)PHENOXY]METHYL]QUINOLIN-2-AMINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:60 , SER A:63 , ARG A:65 , CYS A:66 , PHE A:235 , ASN A:236 , GLY A:237 , TRP A:238 , GLU A:243 , TRP A:329 , TYR A:355 , TYR A:357 , H4B A:902 , M85 A:904 , HOH A:2040 , HOH A:2273 , HOH A:2274 , HOH A:2275 , HOH A:2276BINDING SITE FOR RESIDUE HEM A 901
2AC2SOFTWAREARG A:247 , TRP A:327 , THR A:328 , TRP A:329 , PHE A:342 , HIS A:343 , HEM A:901 , HOH A:2249 , HOH A:2275BINDING SITE FOR RESIDUE H4B A 902
3AC3SOFTWAREGLN A:129 , TYR A:239 , ASN A:248BINDING SITE FOR RESIDUE CL A 903
4AC4SOFTWAREHIS A:128 , ILE A:218 , PHE A:235 , TRP A:238 , TYR A:239 , GLU A:243 , TYR A:357 , HEM A:901BINDING SITE FOR RESIDUE M85 A 904
5AC5SOFTWAREARG A:142 , GLY A:144 , ASP A:166 , ARG A:254 , TYR A:255 , LYS A:257 , HOH A:2104 , HOH A:2190BINDING SITE FOR RESIDUE GOL A 905
6AC6SOFTWAREGLU A:156 , TRP A:160 , ARG A:161 , TRP A:238 , SER A:298 , ILE A:299 , HOH A:2117 , HOH A:2229BINDING SITE FOR RESIDUE GOL A 906

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G6H)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:352 -Pro A:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G6H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G6H)

(-) Exons   (0, 0)

(no "Exon" information available for 5G6H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....hhhhhhhheeee.....hhhhhhhhhhhhhhhhhhhhh...eeee..........eee.........eee....eee...hhhhhhhhhhh.............eeeee......eee..hhhhh.eee.....hhhhhhhh.eee...ee...eeee..eee....ee..eehhhhhh..........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhh.........eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g6h A   3 EKEILWNEAKAFIAACYQELGKAAEVKDRLADIKSEIDLTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDRRDVRTKEEVRDALFHHIETATNNGKIRPTITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASCSLTAACEELGWRGERTDFDLLPLIFRMKGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGIAADYNTDLWKDQALVELNKAVLHSYKKQGVSIVDHHTAASQFKRFEEQAEEAGRKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE 363
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G6H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G6H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G6H)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  5g6h
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  NOSO_BACSU | O34453
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  1.14.13.165
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOSO_BACSU | O34453: 1m7v 1m7z 2amo 2an0 2an2 2fbz 2fc1 2fc2 4d3i 4d3j 4d3k 4d3m 4d3n 4d3o 4d3t 4d3u 4d3v 4d7h 4d7i 4d7j 4lwa 4lwb 4ug5 4ug6 4ug7 4ug8 4ug9 4uga 4ugb 4ugc 4ugd 4uge 4ugf 4ugg 4ugh 4ugi 4ugj 4ugk 4ugl 4ugm 4ugn 4ugo 4ugp 4ugq 4ugr 4ugs 4ugt 4ugu 4ugv 4ugw 4ugx 4ugy 4uqr 4uqs 5g65 5g66 5g67 5g68 5g69 5g6a 5g6b 5g6c 5g6d 5g6e 5g6f 5g6g 5g6i 5g6j 5g6k 5g6l 5g6m 5g6n 5g6o 5g6p 5g6q

(-) Related Entries Specified in the PDB File

5g65 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH QUINOLIN-2-AMINE
5g66 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 4-METHYLQUINOLIN-2-AMINE
5g67 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-FLUOROPHENETHYLAMINO)METHYL)QUINOLIN -2-AMINE
5g68 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(2-(3-(3-FLUOROPHENYL(PROPYLAMINO) METHYL))QUINOLIN-2- AMINE
5g69 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(2-(3-FLUOROBENZYLAMINO)ETHYL)QUINOLIN -2-AMINE
5g6a STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-FLUOROPHENETHYLAMINO)ETHYL)QUINOLIN- 2-AMINE
5g6b STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TWO MOLECULES OF 7-((3- FLUOROPHENETHYLAMINO)ETHYL)QUINOLIN-2-AMINE
5g6c STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((3-FLUOROPHENETHYLAMINO)ETHYL) QUINOLIN-2-AMINE
5g6d STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((3-(DIMETHYLAMINO)BENZYL)AMINO)METHYL )QUINOLIN-2-AMINE
5g6e STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((3-(PYRIDIN-3-YL)PROPYL)AMINO) METHYL)QUINOLIN-2-AMINE
5g6f STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((3-((DIMETHYLAMINO)METHYL)PHENYL) AMINO)METHYL) QUINOLIN-2-AMINE
5g6g STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((2-((METHYLAMINO)METHYL)PHENOXY)METHYL )QUINOLIN-2-AMINE
5g6i STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((3-(METHYLAMINO)METHYL) PHENOXY)METHYL)QUINOLIN-2-AMINE
5g6j STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-(2-(METHYLAMINO)ETHYL)PHENOXY) METHYL)QUINOLIN-2- AMINE
5g6k STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((3-(2-(METHYLAMINO)ETHYL) PHENOXY)METHYL)QUINOLIN-2- AMINE
5g6l STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((4-CHLORO-3-((METHYLAMINO)METHYL) PHENOXY)METHYL) QUINOLIN-2-AMINE
5g6m STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-AMINOMETHYL)PHENOXY)METHYL)QUINOLIN -2-AMINE
5g6n STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((4-(DIMETHYLAMINO)METHYL)PHENOXY) METHYL)QUINOLIN-2- AMINE
5g6o STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TWO MOLECULES OF 7-((4-(DIMETHYLAMINO) METHYL)PHENOXY)METHYL)QUINOLIN-2- AMINE
5g6p STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((4-(DIMETHYLAMINO)METHYL) PHENOXY)METHYL)QUINOLIN-2- AMINE
5g6q STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((5-((METHYLAMINO)METHYL)PYRIDIN-3- YL)OXY)METHYL) QUINOLIN-2-AMINE