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(-) Description

Title :  STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 6-(4-(((3-FLUOROPHENETHYL)AMINO)METHYL)PHENYL) -4-METHYLPYRIDIN-2-AMINE
 
Authors :  J. K. Holden, T. L. Poulos
Date :  25 Nov 14  (Deposition) - 01 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. K. Holden, S. Kang, F. C. Beasley, M. A. Cinelli, H. Li, S. G. Roy, D. Dejam, A. L. Edinger, V. Nizet, R. B. Silverman, T. L. Poulos
Nitric Oxide Synthase As A Target For Methicillin-Resistant Staphylococcus Aureus.
Chem. Biol. V. 22 785 2015
PubMed-ID: 26091171  |  Reference-DOI: 10.1016/J.CHEMBIOL.2015.05.013

(-) Compounds

Molecule 1 - NITRIC OXIDE SYNTHASE OXYGENASE
    Atcc23857
    ChainsA
    EC Number1.14.13.165
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET28A
    Expression System Vector TypePLASMID
    MutationYES
    Organism ScientificBACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid224308
    SynonymNOSOXY-LIKE PROTEIN, NITRIC OXIDE SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 10)

Asymmetric Unit (7, 10)
No.NameCountTypeFull Name
10GD1Ligand/Ion6-[4-({[2-(3-FLUOROPHENYL)ETHYL]AMINO}METHYL)PHENYL]-4-METHYLPYRIDIN-2-AMINE
2CL1Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL
4H4B1Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
5HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
7POL1Ligand/IonN-PROPANOL
Biological Unit 1 (6, 18)
No.NameCountTypeFull Name
10GD2Ligand/Ion6-[4-({[2-(3-FLUOROPHENYL)ETHYL]AMINO}METHYL)PHENYL]-4-METHYLPYRIDIN-2-AMINE
2CL-1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL
4H4B2Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
5HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
7POL2Ligand/IonN-PROPANOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:60 , SER A:63 , ARG A:65 , CYS A:66 , PHE A:235 , ASN A:236 , TRP A:238 , GLU A:243 , TRP A:329 , TYR A:355 , TYR A:357 , H4B A:902 , 0GD A:904 , PEG A:909 , GOL A:912 , HOH A:2391 , HOH A:2392BINDING SITE FOR RESIDUE HEM A 901
02AC2SOFTWAREARG A:247 , TRP A:327 , THR A:328 , TRP A:329 , PHE A:342 , HIS A:343 , ARG A:344 , HEM A:901 , HOH A:2279 , HOH A:2362 , HOH A:2363 , HOH A:2392 , HOH A:2393BINDING SITE FOR RESIDUE H4B A 902
03AC3SOFTWAREGLN A:129 , ARG A:132 , TYR A:239 , ASN A:248BINDING SITE FOR RESIDUE CL A 903
04AC4SOFTWAREILE A:218 , PHE A:235 , GLY A:237 , TRP A:238 , TYR A:239 , GLU A:243 , TYR A:357 , HEM A:901 , PEG A:909BINDING SITE FOR RESIDUE 0GD A 904
05AC5SOFTWAREGLU A:156 , TRP A:160 , ARG A:161 , TRP A:238 , SER A:298 , ILE A:299 , HOH A:2194 , HOH A:2197 , HOH A:2394BINDING SITE FOR RESIDUE GOL A 906
06AC6SOFTWAREARG A:142 , GLY A:144 , ASP A:166 , TYR A:255 , LYS A:257 , HOH A:2177BINDING SITE FOR RESIDUE GOL A 907
07AC7SOFTWAREVAL A:183 , TRP A:184 , ASN A:272 , HOH A:2304 , HOH A:2395BINDING SITE FOR RESIDUE GOL A 908
08AC8SOFTWAREHIS A:128 , ASP A:220 , MET A:221 , TYR A:357 , HEM A:901 , 0GD A:904BINDING SITE FOR RESIDUE PEG A 909
09AC9SOFTWARESER A:263 , GLY A:266 , ILE A:267BINDING SITE FOR RESIDUE POL A 911
10BC1SOFTWAREARG A:65 , TYR A:355 , PHE A:356 , TYR A:357 , HEM A:901 , HOH A:2054 , HOH A:2397BINDING SITE FOR RESIDUE GOL A 912

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D7J)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:352 -Pro A:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D7J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D7J)

(-) Exons   (0, 0)

(no "Exon" information available for 4D7J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....hhhhhhhheeee.....hhhhhhhhhhhhhhhhhhhhh...eeee..........eee.........eeee..eeee...hhhhhhhhh...............eeeee......eee..hhhhh.eee.....hhhhhhhh.eee...ee...eeee..eee....ee..eehhhhhh..........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhh.........eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d7j A   2 EEKEILWNEAKAFIAACYQELGKAAEVKDRLADIKSEIDLTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDRRDVRTKEEVRDALFHHIETATNNGKIRPTITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASCSLTAACEELGWRGERTDFDLLPLIFRMKGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGIAADYNTDLWKDQALVELNKAVLHSYKKQGVSIVDHHTAASQFKRFEEQAEEAGRKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D7J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D7J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D7J)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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    Lys A:352 - Pro A:353   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOSO_BACSU | O344531m7v 1m7z 2amo 2an0 2an2 2fbz 2fc1 2fc2 4d3i 4d3j 4d3k 4d3m 4d3n 4d3o 4d3t 4d3u 4d3v 4d7h 4d7i 4lwa 4lwb 4ug5 4ug6 4ug7 4ug8 4ug9 4uga 4ugb 4ugc 4ugd 4uge 4ugf 4ugg 4ugh 4ugi 4ugj 4ugk 4ugl 4ugm 4ugn 4ugo 4ugp 4ugq 4ugr 4ugs 4ugt 4ugu 4ugv 4ugw 4ugx 4ugy 4uqr 4uqs 5g65 5g66 5g67 5g68 5g69 5g6a 5g6b 5g6c 5g6d 5g6e 5g6f 5g6g 5g6h 5g6i 5g6j 5g6k 5g6l 5g6m 5g6n 5g6o 5g6p 5g6q

(-) Related Entries Specified in the PDB File

4d7h STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(2-(3-(3-FLUOROPHENYL(PROPYLAMINO) ETHYL))QUINOLIN-2- AMINE
4d7i STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 6-(4-(((3-FLUOROPHENETHYL)AMINO )METHYL)PHENYL)-4-METHYLPYRIDIN-2-AMINE