Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(2-(3-(3-FLUOROPHENYL(PROPYLAMINO)METHYL)) QUINOLIN-2- AMINE
 
Authors :  J. K. Holden, T. L. Poulos
Date :  18 Jun 16  (Deposition) - 21 Sep 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Nitric Oxide Synthase, Oxidoreductase, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. K. Holden, M. C. Lewis, M. A. Cinelli, Z. Abdullatif, A. V. Pensa, R. B. Silverman, T. L. Poulos
Targeting Bacterial Nitric Oxide Synthase With Aminoquinoline-Based Inhibitors.
Biochemistry V. 55 5587 2016
PubMed-ID: 27607918  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00786

(-) Compounds

Molecule 1 - NITRIC OXIDE SYNTHASE OXYGENASE
    Atcc: 23857
    Chains: A
    EC Number: 1.14.13.165
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: NOSOXY-LIKE PROTEIN, NITRIC OXIDE SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 12)

Asymmetric Unit (8, 12)
No.NameCountTypeFull Name
1BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CL1Ligand/IonCHLORIDE ION
3GOL1Ligand/IonGLYCEROL
4H4B1Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
5HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6ML62Ligand/Ion7-({[3-(3-FLUOROPHENYL)PROPYL]AMINO}METHYL)QUINOLIN-2-AMINE
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
8POL4Ligand/IonN-PROPANOL
Biological Unit 1 (7, 22)
No.NameCountTypeFull Name
1BTB2Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4H4B2Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
5HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6ML64Ligand/Ion7-({[3-(3-FLUOROPHENYL)PROPYL]AMINO}METHYL)QUINOLIN-2-AMINE
7PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
8POL8Ligand/IonN-PROPANOL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:60 , SER A:63 , ARG A:65 , CYS A:66 , PHE A:235 , ASN A:236 , GLY A:237 , TRP A:238 , GLU A:243 , TRP A:329 , TYR A:355 , TYR A:357 , H4B A:902 , ML6 A:904 , BTB A:906 , HOH A:2318 , HOH A:2319BINDING SITE FOR RESIDUE HEM A 901
02AC2SOFTWAREARG A:247 , TRP A:327 , THR A:328 , TRP A:329 , PHE A:342 , HIS A:343 , ARG A:344 , HEM A:901 , POL A:910 , POL A:911 , HOH A:2297 , HOH A:2318BINDING SITE FOR RESIDUE H4B A 902
03AC3SOFTWAREGLN A:129 , ARG A:132 , TYR A:239 , ASN A:248BINDING SITE FOR RESIDUE CL A 903
04AC4SOFTWAREARG A:132 , ALA A:147 , ILE A:218 , TRP A:238 , GLU A:243 , HEM A:901 , HOH A:2017 , HOH A:2114BINDING SITE FOR RESIDUE ML6 A 904
05AC5SOFTWAREASN A:103 , ARG A:189 , SER A:190 , LEU A:191 , VAL A:192 , ILE A:193 , GLU A:194 , GLU A:318 , HOH A:2151 , HOH A:2170 , HOH A:2322BINDING SITE FOR RESIDUE ML6 A 905
06AC6SOFTWAREARG A:65 , MET A:221 , ILE A:350 , ASN A:354 , TYR A:355 , PHE A:356 , TYR A:357 , HEM A:901 , HOH A:2032 , HOH A:2034 , HOH A:2035 , HOH A:2038BINDING SITE FOR RESIDUE BTB A 906
07AC7SOFTWAREGLU A:156 , TRP A:160 , ARG A:161 , TRP A:238 , SER A:298 , ILE A:299 , HOH A:2135 , HOH A:2138 , HOH A:2264 , HOH A:2265BINDING SITE FOR RESIDUE GOL A 907
08AC8SOFTWAREGLU A:194 , GLN A:295BINDING SITE FOR RESIDUE PEG A 908
09AC9SOFTWAREASN A:103 , GLN A:295 , GLY A:296BINDING SITE FOR RESIDUE POL A 909
10BC1SOFTWAREARG A:247 , HIS A:343 , H4B A:902 , HOH A:2321BINDING SITE FOR RESIDUE POL A 910
11BC2SOFTWARETRP A:327 , ARG A:344 , SER A:345 , H4B A:902 , HOH A:2091 , HOH A:2294 , HOH A:2308BINDING SITE FOR RESIDUE POL A 911
12BC3SOFTWARECYS A:149 , SER A:150 , ALA A:153 , HOH A:2131BINDING SITE FOR RESIDUE POL A 912

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G68)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:352 -Pro A:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G68)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G68)

(-) Exons   (0, 0)

(no "Exon" information available for 5G68)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....hhhhhhhheeee.....hhhhhhhhhhhhhhhhhhhhh...eeee..........eee.........eeee..eeee...hhhhhhhhhhh.............eeeee......eee..hhhhh.eee.....hhhhhhhh.eee...ee...eeee..eee....ee..eehhhhhh..........hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhh.........eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g68 A   2 EEKEILWNEAKAFIAACYQELGKAAEVKDRLADIKSEIDLTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDRRDVRTKEEVRDALFHHIETATNNGKIRPTITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASCSLTAACEELGWRGERTDFDLLPLIFRMKGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGIAADYNTDLWKDQALVELNKAVLHSYKKQGVSIVDHHTAASQFKRFEEQAEEAGRKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G68)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G68)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G68)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BTB  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    H4B  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HEM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ML6  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    POL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Lys A:352 - Pro A:353   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5g68
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  NOSO_BACSU | O34453
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.14.13.165
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  NOSO_BACSU | O34453
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOSO_BACSU | O34453: 1m7v 1m7z 2amo 2an0 2an2 2fbz 2fc1 2fc2 4d3i 4d3j 4d3k 4d3m 4d3n 4d3o 4d3t 4d3u 4d3v 4d7h 4d7i 4d7j 4lwa 4lwb 4ug5 4ug6 4ug7 4ug8 4ug9 4uga 4ugb 4ugc 4ugd 4uge 4ugf 4ugg 4ugh 4ugi 4ugj 4ugk 4ugl 4ugm 4ugn 4ugo 4ugp 4ugq 4ugr 4ugs 4ugt 4ugu 4ugv 4ugw 4ugx 4ugy 4uqr 4uqs 5g65 5g66 5g67 5g69 5g6a 5g6b 5g6c 5g6d 5g6e 5g6f 5g6g 5g6h 5g6i 5g6j 5g6k 5g6l 5g6m 5g6n 5g6o 5g6p 5g6q

(-) Related Entries Specified in the PDB File

5g65 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH QUINOLIN-2-AMINE
5g66 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 4-METHYLQUINOLIN-2-AMINE
5g67 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-FLUOROPHENETHYLAMINO)METHYL)QUINOLIN -2-AMINE
5g69 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(2-(3-FLUOROBENZYLAMINO)ETHYL)QUINOLIN -2-AMINE
5g6a STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-FLUOROPHENETHYLAMINO)ETHYL)QUINOLIN- 2-AMINE
5g6b STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TWO MOLECULES OF 7-((3- FLUOROPHENETHYLAMINO)ETHYL)QUINOLIN-2-AMINE
5g6c STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((3-FLUOROPHENETHYLAMINO)ETHYL) QUINOLIN-2-AMINE
5g6d STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((3-(DIMETHYLAMINO)BENZYL)AMINO)METHYL )QUINOLIN-2-AMINE
5g6e STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((3-(PYRIDIN-3-YL)PROPYL)AMINO) METHYL)QUINOLIN-2-AMINE
5g6f STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((3-((DIMETHYLAMINO)METHYL)PHENYL) AMINO)METHYL) QUINOLIN-2-AMINE
5g6g STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((2-((METHYLAMINO)METHYL)PHENOXY)METHYL )QUINOLIN-2-AMINE
5g6h STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-(METHYLAMINO)METHYL)PHENOXY)METHYL )QUINOLIN-2-AMINE
5g6i STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((3-(METHYLAMINO)METHYL) PHENOXY)METHYL)QUINOLIN-2-AMINE
5g6j STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-(2-(METHYLAMINO)ETHYL)PHENOXY) METHYL)QUINOLIN-2- AMINE
5g6k STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((3-(2-(METHYLAMINO)ETHYL) PHENOXY)METHYL)QUINOLIN-2- AMINE
5g6l STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((4-CHLORO-3-((METHYLAMINO)METHYL) PHENOXY)METHYL) QUINOLIN-2-AMINE
5g6m STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((3-AMINOMETHYL)PHENOXY)METHYL)QUINOLIN -2-AMINE
5g6n STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-((4-(DIMETHYLAMINO)METHYL)PHENOXY) METHYL)QUINOLIN-2- AMINE
5g6o STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TWO MOLECULES OF 7-((4-(DIMETHYLAMINO) METHYL)PHENOXY)METHYL)QUINOLIN-2- AMINE
5g6p STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN COMPLEX WITH 7-((4-(DIMETHYLAMINO)METHYL) PHENOXY)METHYL)QUINOLIN-2- AMINE
5g6q STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH 7-(((5-((METHYLAMINO)METHYL)PYRIDIN-3- YL)OXY)METHYL) QUINOLIN-2-AMINE