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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF AGGREGATION-RESISTANT PROTECTIVE ANTIGEN OF BACILLUS ANTHRACIS (MUTANT S559L T576E)
 
Authors :  A. Ganesan, A. Siekierska, J. Beerten, M. Brams, J. Van Durme, G. De Ba R. Van Der Kant, R. Gallardo, M. Ramakers, T. Langenberg, H. Wilkins F. De Smet, C. Ulens, F. Rousseau, J. Schymkowitz
Date :  15 Dec 15  (Deposition) - 27 Jan 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A
Keywords :  Toxin, Anthrax Protective Antigen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ganesan, A. Siekierska, J. Beerten, M. Brams, J. Van Durme, G. De Baets, R. Van Der Kant, R. Gallardo, M. Ramakers, T. Langenberg, H. Wilkinson, F. De Smet, C. Ulens, F. Rousseau, J. Schymkowitz
Structural Hot Spots For The Solubility Of Globular Protein
Nat. Commun. V. 7 10816 2016
PubMed-ID: 26905391  |  Reference-DOI: 10.1038/NCOMMS10816

(-) Compounds

Molecule 1 - PROTECTIVE ANTIGEN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET22B
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Other Details: SYNTHETIC GENE
    Synonym: PA, ANTHRAX TOXINS TRANSLOCATING PROTEIN, PA-83, PA83, ANTHRAX PROTECTIVE ANTIGEN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:177 , ASP A:179 , ASP A:181 , ILE A:183 , GLU A:188 , HOH A:2155BINDING SITE FOR RESIDUE CA A1736
2AC2SOFTWAREASP A:179 , ASP A:181 , GLU A:188 , SER A:222 , LYS A:225 , ASP A:235BINDING SITE FOR RESIDUE CA A1737
3AC3SOFTWAREHIS A:336 , GLU A:443 , LYS A:446 , TYR A:660 , ASP A:661BINDING SITE FOR RESIDUE GOL A1738
4AC4SOFTWARETHR A:380 , SER A:382 , ASP A:451 , THR A:452 , ASP A:453 , HOH A:2305 , HOH A:2662BINDING SITE FOR RESIDUE GOL A1739

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FR3)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:411 -Pro A:412

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FR3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FR3)

(-) Exons   (0, 0)

(no "Exon" information available for 5FR3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:688
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......eeeeeee.......hhhhh...hhhhh...eeeeeeee.....eeeeeee.hhh.eeeee..eeeee.......eee.....eeeeeeee............eeee.....eee.hhh.ee..........................hhhhhhhheeeeee..eeeeee.hhhhhhhhh..................hhhhhhh.......hhhhhh........eeeeeeeeeeee.....eeeeeeeee..............eeeeeee.......hhhhhh......eeeeeeeeeeee............eeeee...eeeeee..............eee.......ee...........eeeehhhhhhhhhhheeeeee.....eeeeee....eeeeeeeee...hhhhhhhheeeeee.......eeeeee......hhhhh....hhhhhhhhhhh........ee..ee...eeeeehhhhhhhhhhhhhhh....hhhhh.........eeeeee...ee.....eee.hhhhhhhhh..eeeee..eeee..hhhhhhheeeeeeeee.....eee..........eee.....eeee.................eeeeeeee.hhh.................eeeeeeehhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fr3 A  14 SSSQGLLGYYFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSTSAGPTVPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDMENIILSKNEDRTISKNTSTSRTHTSEVVSAGFSNSNSSTVAIDHSLSERTWAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTLQNIKNQLAELNATNIYEVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG 735
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163|      178       188       198       208       218       228       238       248       258       268       288       298    || 324       334    || 347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727        
                                                                                                                                                                               163|                                                                                                        276|             303|                339|                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                169                                                                                                         287              320                 343
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FR3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FR3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FR3)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:411 - Pro A:412   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAG_BACAN | P13423: 1acc 1t6b 1tx5 1tzn 1tzo 1v36 3etb 3ino 3j9c 3kwv 3mhz 3q8a 3q8b 3q8c 3q8e 3q8f 3tew 3tex 3tey 3tez 4ee2 4h2a 4nam

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FR3)