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(-) Description

Title :  1.7A STRUCTURE OF 5-FLUORO TRYPTOPHAN LABELED PROTECTIVE ANTIGEN (W206Y)
 
Authors :  S. Lovell, K. P. Battaile, F. Chadegani, V. Mulangi, M. Miyagi, J. G. Ban
Date :  22 Oct 13  (Deposition) - 22 Jan 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Anthrax, Toxin, 5-Fluorotryptophan, Pore (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Chadegani, S. Lovell, V. Mullangi, M. Miyagi, K. P. Battaile, J. G. Bann
(19)F Nuclear Magnetic Resonance And Crystallographic Studies Of 5-Fluorotryptophan-Labeled Anthrax Protective Antigen And Effects Of The Receptor On Stability.
Biochemistry V. 53 690 2014
PubMed-ID: 24387629  |  Reference-DOI: 10.1021/BI401405S

(-) Compounds

Molecule 1 - PROTECTIVE ANTIGEN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE80
    Expression System Strain: DL41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PAGA, PAG, PXO1-110, BXA0164, GBAA_PXO1_0164
    Mutation: YES
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: PA, ANTHRAX TOXINS TRANSLOCATING PROTEIN, PA-83, PA83, PROTECTIVE ANTIGEN PA-20, PA20, PROTECTIVE ANTIGEN PA-63, PA63

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2FTR6Mod. Amino AcidFLUOROTRYPTOPHANE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:179 , ASP A:181 , GLU A:188 , SER A:222 , LYS A:225 , ASP A:235BINDING SITE FOR RESIDUE CA A 801
2AC2SOFTWAREASP A:177 , ASP A:179 , ASP A:181 , ILE A:183 , GLU A:188 , HOH A:904BINDING SITE FOR RESIDUE CA A 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NAM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:411 -Pro A:412

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NAM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NAM)

(-) Exons   (0, 0)

(no "Exon" information available for 4NAM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:682
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4nama2 A:16-225 PA14                                                                                                                                                                                d4nama1 A:226-734 Anthrax protective antigen C-terminal-like                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.......eeeeee........hhhhh...hhhhhh..eeeeeeeee....eeeeeee.hhh.eeeee..eeee..eeee....eeeeeeeee............eeee.....eee.hhh.ee...............................hhhhhhhheeee..eeee........................hhhhhhhh......hhhhhh........eeeeeeeeeeee...............eeeeeeeee......eeeeeee..........hhhhhhh......eeeeeeeeeee............eeeee...eeeeee..............eee.......ee...........eeehhhhhhhhhhhheeeeee.....eeeee......eeeeeeee...hhhhhhhheeeeee.......eeeeee.....hhhhhhh...hhhhhhhhhhh........ee..ee...eeeeehhhhhhhhhhhhhhhh..hhhhh..........eeeeee..eee.....eeeehhhhhhhhh..eeeee..eeee..hhhhhhheeeeeeeee.....eee..........eee.....eeee.................eeeeeeee.hhh.................eeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nam A  16 SQGLLGYYFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQSAIwSGFIKVKKSDEYTFATSADNHVTMwVDDQEVINNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYwTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGPTVPDRDNDGIPDSLEVEGYTVDVTFLSPYISNIHLTKYKSSPEKwSTASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDMENIILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSNSNSSTVAIDHSLSLAGERTwAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNwSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEI 734
                                    25        35        45        55        65        75        85    |   95  ||   110       120       130     | 140       150       160       170       180       190     ||204      |218       228       238       248       258       268       278       288       298 ||    332       342   |   352       362       372       382       392       402       412       422       432       442       452       462       472    |  482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732  
                                                                            65-FTR                   90-FTR  98|                             136-FTR                                                     196|       211|       226-FTR                                                                   300|                  346-FTR                                                                                                                            477-FTR                                                                                                                                                                                                                                                             
                                                                                                             104                                                                                          201        216                                                                                  325
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NAM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NAM)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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    Tyr A:411 - Pro A:412   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAG_BACAN | P13423: 1acc 1t6b 1tx5 1tzn 1tzo 1v36 3etb 3ino 3j9c 3kwv 3mhz 3q8a 3q8b 3q8c 3q8e 3q8f 3tew 3tex 3tey 3tez 4ee2 4h2a 5fr3

(-) Related Entries Specified in the PDB File

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