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(-) Description

Title :  TETR(D) N82A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM
 
Authors :  S. Werten, J. Schneider, G. J. Palm, W. Hinrichs
Date :  17 Oct 15  (Deposition) - 06 Apr 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription, Repressor, Antibiotic Resistance, Tetr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Werten, J. Schneider, G. J. Palm, W. Hinrichs
Modular Organisation Of Inducer Recognition And Allostery In The Tetracycline Repressor
Febs J. V. 283 2102 2016
PubMed-ID: 27028290  |  Reference-DOI: 10.1111/FEBS.13723

(-) Compounds

Molecule 1 - TETRACYCLINE REPRESSOR, CLASS D
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: K-12
    Expression System Taxid: 83333
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 14)

Asymmetric/Biological Unit (6, 14)
No.NameCountTypeFull Name
1CL9Ligand/IonCHLORIDE ION
2MG1Ligand/IonMAGNESIUM ION
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4PGE1Ligand/IonTRIETHYLENE GLYCOL
5SO41Ligand/IonSULFATE ION
6TDC1Ligand/Ion5A,6-ANHYDROTETRACYCLINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:60 , HIS A:64 , SER A:67 , PHE A:86 , THR A:112 , SER A:138 , HOH A:2038BINDING SITE FOR RESIDUE PG4 A 222
02AC2SOFTWAREARG A:92 , ARG B:92 , HOH B:2010 , HOH B:2049BINDING SITE FOR RESIDUE SO4 A 301
03AC3SOFTWARESER A:2 , ARG A:3 , SER A:74 , SER A:77BINDING SITE FOR RESIDUE CL A 302
04AC4SOFTWAREARG A:3 , LEU A:4 , GLN A:76 , ARG A:80 , HOH A:2104BINDING SITE FOR RESIDUE CL A 303
05AC5SOFTWAREASN A:5 , GLU A:7BINDING SITE FOR RESIDUE CL A 304
06AC6SOFTWARETHR A:26 , THR A:27 , HOH A:2015BINDING SITE FOR RESIDUE CL A 305
07AC7SOFTWARELEU A:174 , MET A:177 , HOH A:2077 , HOH A:2078 , HIS B:64 , SER B:67 , ALA B:82 , PHE B:86 , HIS B:100 , THR B:103 , ARG B:104 , PRO B:105 , VAL B:113 , GLN B:116 , MG B:223 , HOH B:2072 , HOH B:2084 , HOH B:2099 , HOH B:2102 , HOH B:2120BINDING SITE FOR RESIDUE TDC B 222
08AC8SOFTWAREHOH A:2077 , HOH A:2078 , HIS B:100 , TDC B:222 , HOH B:2072BINDING SITE FOR RESIDUE MG B 223
09AC9SOFTWAREARG B:3 , SER B:74 , SER B:77BINDING SITE FOR RESIDUE CL B 302
10BC1SOFTWAREARG B:3 , LEU B:4 , GLN B:76 , ARG B:80 , HOH B:2108BINDING SITE FOR RESIDUE CL B 303
11BC2SOFTWAREASN B:5 , ARG B:6 , GLU B:7BINDING SITE FOR RESIDUE CL B 304
12BC3SOFTWARETHR B:26 , THR B:27 , HOH B:2024BINDING SITE FOR RESIDUE CL B 305
13BC4SOFTWAREASN A:18 , LEU A:91 , ARG A:92 , ARG B:92 , ARG B:94BINDING SITE FOR RESIDUE PGE B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FKK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FKK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FKK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FKK)

(-) Exons   (0, 0)

(no "Exon" information available for 5FKK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fkk A   2 SRLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNAAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDPDENLPPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQLTALLQIV 208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     ||165       175       185       195       205   
                                                                                                                                                                                     157|                                              
                                                                                                                                                                                      162                                              


Chain B from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh..hhhhhhh....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fkk B   2 SRLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNAAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALPPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQLTALLQIV 208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  ||   172       182       192       202      
                                                                                                                                                                                  154|                                          
                                                                                                                                                                                   166
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FKK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FKK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FKK)

(-) Gene Ontology  (6, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  5fkk
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  TETR4_ECOLX | P0ACT4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C6G9U5_ECOLX | C6G9U5: 5fkl 5fkm 5fkn 5fko
        TETR4_ECOLX | P0ACT4: 1a6i 1bjz 1ork 1qpi 2fj1 2ns7 2ns8 2o7o 2tct 2trt 2vke 2vkv 2x6o 2x9d 2xb5 2xgc 2xgd 2xge 2xpu 2xpv 2xpw 2xrl 3fk6 3fk7 3zqf 3zqg 3zqh 3zqi 4abz 4aux 4b1r 4b3a 4d7m 4d7n 4v2f 4v2g 5fkl 5fkm 5fkn 5fko

(-) Related Entries Specified in the PDB File

5fkl TETR(D) H100A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM
5fkm TETR(D) T103A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM, I4(1)22
5fkn TETR(D) T103A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM, P4(3)2(1)2
5fko TETR(D) E147A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM