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(-) Description

Title :  PI4KB IN COMPLEX WITH RAB11 AND THE MI369 INHIBITOR
 
Authors :  D. Chalupska, I. Mejdrova, R. Nencka, E. Boura
Date :  14 Dec 15  (Deposition) - 28 Dec 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.49
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Inhibitor, Complex, Kinase, Lipid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Chalupska, I. Mejdrova, R. Nencka, E. Boura
Pi4Kb In Complex With Rab11 And The Mi369 Inhibitor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4-KINASE BETA,PHOSPHATIDYLINOSITOL 4- KINASE BETA
    Chains: A
    EC Number: 2.7.1.67, 2.7.1.67
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 128-422, 523-729,UNP RESIDUES 128-422, 523- 729
    Gene: PI4KB, PIK4CB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PTDINS 4-KINASE BETA,NPIK,PI4K92,PTDINS 4-KINASE BETA,NPIK, PI4K92
 
Molecule 2 - RAS-RELATED PROTEIN RAB-11A
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RAB11A, RAB11
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RAB-11,YL8

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
15W81Ligand/Ion~{N}-[2-[[6-CHLORANYL-3-[4-METHOXY-3-[[(2~{R})-1-OXIDANYLBUTAN-2-YL]SULFAMOYL]PHENYL]-2-METHYL-IMIDAZO[1,2-B]PYRIDAZIN-8-YL]AMINO]ETHYL]ETHANAMIDE
2GSP1Ligand/Ion5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:374 , PRO A:381 , ILE A:562 , LYS A:564 , ASP A:567 , TYR A:598 , ILE A:610 , GLU A:611 , PRO A:612 , VAL A:613 , ASN A:615 , ALA A:616 , ILE A:688 , ASP A:689binding site for residue 5W8 A 801
2AC2SOFTWAREGLY A:155 , SER B:20 , GLY B:21 , VAL B:22 , GLY B:23 , LYS B:24 , SER B:25 , ASN B:26 , ASN B:37 , LEU B:38 , SER B:40 , LYS B:41 , THR B:43 , ASN B:124 , LYS B:125 , ASP B:127 , LEU B:128 , SER B:154 , ALA B:155 , LEU B:156binding site for residue GSP B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FBW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FBW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FBW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FBW)

(-) Exons   (0, 0)

(no "Exon" information available for 5FBW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhee........eeeeeeeee..hhhhh..............hhhhhhhhhhhhh.......eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..........eee.....eee.....eeehhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.........eeee....eee...........hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbw A 128 SWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSRGTKLRKLILSRLAPEREFIKSLMAIGKRLATLPTKEQKTQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECENFDTTSVPARIPENVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSFKLTTEFVDVMGGLDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMSMTEEQLQLLVEQMVDGSMRS 799
                                   137       147       157       167       177       187       197       207       217   ||  237    || 310       320       330       340       350       360       370       380       390       400     ||534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694||     716       726       736       746       756       766       776       786       796   
                                                                                                                       221|       242|                                                                                                 406|                                                                                                                                                                 695|                                                                                           
                                                                                                                        232        306                                                                                                  531                                                                                                                                                                  708                                                                                           


Chain B from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....hhhhhhhhhhhh............eeeee..ee..eeeeeeeee............eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhh..hhhhhhhhhhhh.............hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbw B   8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
                                    17        27        37        47        57        67|       84        94       104       114       124       134       144       154       164       174     
                                                                                      67|                                                                                                        
                                                                                       75
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FBW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FBW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FBW)

(-) Gene Ontology  (73, 82)

Asymmetric/Biological Unit(hide GO term definitions)

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  5fbw
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  PI4KB_HUMAN | Q9UBF8
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  RB11A_HUMAN | P62491
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  2.7.1.67
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PI4KB_HUMAN | Q9UBF8: 2n73 4d0l 4d0m 4wae 4wag 5c46 5c4g 5euq 5fbl 5fbq 5fbr 5fbv 5lx2 5nas
        RB11A_HUMAN | P62491: 1oiv 1oiw 1oix 1yzk 2d7c 2gzd 2gzh 2hv8 4c4p 4d0l 4d0m 4lwz 4lx0 4uj3 4uj4 4uj5 5c46 5c4g 5euq 5ez5 5fbl 5fbq 5fbr 5fbv 5jcz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FBW)