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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN RAB11-RABIN8-FIP3
 
Authors :  M. Vetter, E. Lorentzen
Date :  08 Apr 15  (Deposition) - 12 Aug 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Biol. Unit 5:  M,N,O  (1x)
Biol. Unit 6:  P,Q,R  (1x)
Biol. Unit 7:  S,T,U  (1x)
Biol. Unit 8:  V,W,X  (1x)
Keywords :  Transport Protein, Ciliary Targeting Complex, Cilium, Vesicular Transport, Membrane Trafficking (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Vetter, R. Stehle, C. Basquin, E. Lorentzen
Structure Of Rab11-Fip3-Rabin8 Reveals Simultaneous Binding Of Fip3 And Rabin8 Effectors To Rab11.
Nat. Struct. Mol. Biol. V. 22 695 2015
PubMed-ID: 26258637  |  Reference-DOI: 10.1038/NSMB.3065

(-) Compounds

Molecule 1 - RAS-RELATED PROTEIN RAB-11A
    Chains: A, D, G, J, M, P, S, V
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: GTPASE DOMAIN
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RAB-11, YL8, RAB11A
 
Molecule 2 - RAB-3A-INTERACTING PROTEIN
    Chains: B, E, H, K, N, Q, T, W
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RAB3A-INTERACTING PROTEIN, RABIN-3, SSX2-INTERACTING PROTEIN, RABIN8
 
Molecule 3 - RAB11 FAMILY-INTERACTING PROTEIN 3
    Chains: C, F, I, L, O, R, U, X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FIP3-RAB11, RAB11-FIP3, ARFOPHILIN-1, EF HANDS-CONTAINING RAB-INTERACTING PROTEIN, EFERIN, MU-MB-17.148, FIP3

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWX
Biological Unit 1 (1x): ABC                     
Biological Unit 2 (1x):    DEF                  
Biological Unit 3 (1x):       GHI               
Biological Unit 4 (1x):          JKL            
Biological Unit 5 (1x):             MNO         
Biological Unit 6 (1x):                PQR      
Biological Unit 7 (1x):                   STU   
Biological Unit 8 (1x):                      VWX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric Unit (4, 18)
No.NameCountTypeFull Name
1GNP8Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG8Ligand/IonMAGNESIUM ION
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4SO4-1Ligand/IonSULFATE ION
Biological Unit 5 (2, 2)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4SO41Ligand/IonSULFATE ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4SO4-1Ligand/IonSULFATE ION
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4SO4-1Ligand/IonSULFATE ION
Biological Unit 8 (2, 2)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4SO4-1Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:20 , GLY A:21 , VAL A:22 , GLY A:23 , LYS A:24 , SER A:25 , ASN A:26 , PHE A:36 , ASN A:37 , LEU A:38 , SER A:40 , SER A:42 , THR A:43 , GLY A:69 , ASN A:124 , LYS A:125 , ASP A:127 , LEU A:128 , SER A:154 , ALA A:155 , LEU A:156 , MG A:201 , TYR B:423BINDING SITE FOR RESIDUE GNP A 200
02AC2SOFTWARESER A:25 , THR A:43 , GNP A:200BINDING SITE FOR RESIDUE MG A 201
03AC3SOFTWARESER D:20 , GLY D:21 , VAL D:22 , GLY D:23 , LYS D:24 , SER D:25 , ASN D:26 , PHE D:36 , ASN D:37 , LEU D:38 , SER D:40 , SER D:42 , THR D:43 , THR D:67 , GLY D:69 , ASN D:124 , LYS D:125 , ASP D:127 , LEU D:128 , SER D:154 , ALA D:155 , LEU D:156 , MG D:201 , TYR E:423BINDING SITE FOR RESIDUE GNP D 200
04AC4SOFTWARESER D:25 , THR D:43 , ASP D:66 , GNP D:200BINDING SITE FOR RESIDUE MG D 201
05AC5SOFTWARESER G:20 , GLY G:21 , GLY G:23 , LYS G:24 , SER G:25 , ASN G:26 , ASN G:37 , LEU G:38 , SER G:40 , SER G:42 , THR G:43 , GLY G:69 , ASN G:124 , LYS G:125 , ASP G:127 , LEU G:128 , SER G:154 , ALA G:155 , LEU G:156 , MG G:201 , TYR H:423BINDING SITE FOR RESIDUE GNP G 200
06AC6SOFTWARESER G:25 , THR G:43 , ASP G:66 , THR G:67 , GNP G:200BINDING SITE FOR RESIDUE MG G 201
07AC7SOFTWARESER J:20 , GLY J:21 , VAL J:22 , GLY J:23 , LYS J:24 , SER J:25 , ASN J:26 , PHE J:36 , ASN J:37 , LEU J:38 , SER J:40 , SER J:42 , THR J:43 , GLY J:69 , ASN J:124 , LYS J:125 , ASP J:127 , LEU J:128 , SER J:154 , ALA J:155 , LEU J:156 , MG J:201 , TYR K:423BINDING SITE FOR RESIDUE GNP J 200
08AC8SOFTWARESER J:25 , THR J:43 , ASP J:66 , THR J:67 , GNP J:200BINDING SITE FOR RESIDUE MG J 201
09AC9SOFTWARESER M:20 , GLY M:21 , VAL M:22 , GLY M:23 , LYS M:24 , SER M:25 , ASN M:26 , PHE M:36 , ASN M:37 , LEU M:38 , SER M:40 , SER M:42 , THR M:43 , THR M:67 , ALA M:68 , GLY M:69 , ASN M:124 , LYS M:125 , ASP M:127 , LEU M:128 , SER M:154 , ALA M:155 , LEU M:156 , MG M:201 , TYR N:423BINDING SITE FOR RESIDUE GNP M 200
10BC1SOFTWARESER M:25 , THR M:43 , ASP M:66 , THR M:67 , GNP M:200BINDING SITE FOR RESIDUE MG M 201
11BC2SOFTWAREASP P:19 , SER P:20 , GLY P:21 , VAL P:22 , GLY P:23 , LYS P:24 , SER P:25 , ASN P:26 , PHE P:36 , ASN P:37 , LEU P:38 , SER P:42 , THR P:43 , THR P:67 , GLY P:69 , ASN P:124 , LYS P:125 , ASP P:127 , LEU P:128 , SER P:154 , ALA P:155 , LEU P:156 , MG P:201BINDING SITE FOR RESIDUE GNP P 200
12BC3SOFTWARESER P:25 , THR P:43 , ASP P:66 , THR P:67 , GNP P:200BINDING SITE FOR RESIDUE MG P 201
13BC4SOFTWARESER S:20 , GLY S:21 , VAL S:22 , GLY S:23 , LYS S:24 , SER S:25 , ASN S:26 , PHE S:36 , ASN S:37 , LEU S:38 , SER S:40 , SER S:42 , THR S:43 , THR S:67 , GLY S:69 , ASN S:124 , LYS S:125 , ASP S:127 , LEU S:128 , SER S:154 , ALA S:155 , LEU S:156 , MG S:201 , TYR T:423BINDING SITE FOR RESIDUE GNP S 200
14BC5SOFTWARELYS S:24 , SER S:25 , THR S:43 , ASP S:66 , THR S:67 , GNP S:200BINDING SITE FOR RESIDUE MG S 201
15BC6SOFTWAREASP V:19 , SER V:20 , GLY V:21 , VAL V:22 , GLY V:23 , LYS V:24 , SER V:25 , ASN V:26 , ASN V:37 , LEU V:38 , SER V:40 , SER V:42 , THR V:43 , THR V:67 , GLY V:69 , ASN V:124 , LYS V:125 , ASP V:127 , LEU V:128 , SER V:154 , ALA V:155 , LEU V:156 , MG V:201 , PG4 V:300 , TYR W:423BINDING SITE FOR RESIDUE GNP V 200
16BC7SOFTWARESER V:25 , THR V:43 , GNP V:200BINDING SITE FOR RESIDUE MG V 201
17BC8SOFTWAREGNP V:200 , THR W:419 , TYR W:420 , TYR W:423 , GLU W:440BINDING SITE FOR RESIDUE PG4 V 300
18BC9SOFTWAREARG M:140 , PHE M:150 , ILE M:151 , GLU Q:372 , ASN Q:399 , TYR Q:401BINDING SITE FOR RESIDUE SO4 M1182

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UJ3)

(-) Cis Peptide Bonds  (14, 14)

Asymmetric Unit
No.Residues
1Gly B:395 -Asp B:396
2Gly B:427 -Leu B:428
3Val D:122 -Gly D:123
4Gly E:427 -Leu E:428
5Val G:122 -Gly G:123
6Gly H:427 -Leu H:428
7Gly K:427 -Leu K:428
8Val M:122 -Gly M:123
9Gly N:395 -Asp N:396
10Ala Q:368 -Ser Q:369
11Gly Q:427 -Leu Q:428
12Glu S:71 -Arg S:72
13Val S:122 -Gly S:123
14Gly W:427 -Leu W:428

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UJ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UJ3)

(-) Exons   (0, 0)

(no "Exon" information available for 4UJ3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee........hhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 A   4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173      


Chain B from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee.........................eeee......eeeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 B 291 VKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKE 458
                                   300       310       320       330       340       350       367       377       387       397       407       417       427       437       447       457 
                                                                                              359|                                                                                           
                                                                                               367                                                                                           


Chain C from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 4uj3 C 720 LMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEV 755
                                   729       739       749      


Chain D from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee.....hhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 D   4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM 181
                                    13        23        33        43        53        63        76        86        96       106       116       126       136       146       156       166       176     
                                                                                               72|                                                                                                         
                                                                                                76                                                                                                         


Chain E from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee.........................eeee....eeeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uj3 E 290 IVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLASAVECGGPKKCALTGQSKSCKHRIKLGDNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL 460
                                   299       309       319       329       339       349       359||     376       386       396|      408       418       428       438       448       458  
                                                                                                360|                         396|                                                             
                                                                                                 368                          399                                                             


Chain F from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4uj3 F 720 LMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 756
                                   729       739       749       


Chain G from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee........hhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 G   5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174     


Chain H from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee......................eeee......eeeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 H 294 CKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVSAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKE 458
                                   303       313       323       333       343       353    || 373       383       393       403       413       423       433       443       453     
                                                                                          358|                                                                                         
                                                                                           369                                                                                         


Chain I from PDB  Type:PROTEIN  Length:41
                                                                         
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 4uj3 I 716 SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 756
                                   725       735       745       755 


Chain J from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee......hhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uj3 J   4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
                                    13        23        33        43        53        63        75        85        95       105       115       125       135       145       155       165       175    
                                                                                               72|                                                                                                        
                                                                                                75                                                                                                        


Chain K from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee.....................eeee.......eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 K 290 IVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEE 459
                                   299       309       319       329       339       349       359|      380       390       400       410       420       430       440       450         
                                                                                               359|                                                                                        
                                                                                                371                                                                                        


Chain L from PDB  Type:PROTEIN  Length:38
                                                                      
               SCOP domains -------------------------------------- SCOP domains
               CATH domains -------------------------------------- CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                 4uj3 L 719 ELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 756
                                   728       738       748        


Chain M from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee......hhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..ee.........hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uj3 M   6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM 181
                                    15        25        35        45        55        65      ||77        87        97       107       117       127       137       147       157       167       177    
                                                                                             72|                                                                                                          
                                                                                              75                                                                                                          


Chain N from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee..........................eeee......eeeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 N 290 IVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEE 459
                                   299       309       319       329       339       349       359|      375       385       395       405       415       425       435       445       455    
                                                                                               359|                                                                                             
                                                                                                366                                                                                             


Chain O from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4uj3 O 720 LMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 756
                                   729       739       749       


Chain P from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee....hhhhhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 P   5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLEITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
                                    14        24        34        44        54        64      ||78        88        98       108       118       128       138       148       158       168       178 
                                                                                             71|                                                                                                       
                                                                                              76                                                                                                       


Chain Q from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee....hhhhh...............eeee......eeeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 Q 291 VKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEE 459
                                   300       310       320       330       340       350       368       378       388       398       408       418       428       438       448       458 
                                                                                              359|                                                                                           
                                                                                               368                                                                                           


Chain R from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4uj3 R 720 LMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 756
                                   729       739       749       


Chain S from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee.......hhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 S   7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
                                    16        26        36        46        56        66     || 78        88        98       108       118       128       138       148       158       168       178 
                                                                                            72|                                                                                                        
                                                                                             75                                                                                                        


Chain T from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee........................eeee.......eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 T 289 PIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL 460
                                   298       308       318       328       338       348       358   ||  376       386       396       406       416       426       436       446       456    
                                                                                                   362|                                                                                         
                                                                                                    371                                                                                         


Chain U from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4uj3 U 720 LMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 756
                                   729       739       749       


Chain V from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee......hhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 V   7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLEAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQ 178
                                    16        26        36        46        56        66    ||  79        89        99       109       119       129       139       149       159       169         
                                                                                           71|                                                                                                       
                                                                                            75                                                                                                       


Chain W from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...eeee....................eeee.......eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uj3 W 293 DCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEE 459
                                   302       312       322       332       342       352      |374       384       394       404       414       424       434       444       454     
                                                                                            359|                                                                                       
                                                                                             372                                                                                       


Chain X from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 4uj3 X 721 MEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 756
                                   730       740       750
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UJ3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UJ3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UJ3)

(-) Gene Ontology  (83, 103)

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  4uj3
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  RB11A_HUMAN | P62491
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAB3I_HUMAN | Q96QF0: 4lhx 4lhy 4lhz 4uj4 4uj5 5oag
        RB11A_HUMAN | P62491: 1oiv 1oiw 1oix 1yzk 2d7c 2gzd 2gzh 2hv8 4c4p 4d0l 4d0m 4lwz 4lx0 4uj4 4uj5 5c46 5c4g 5euq 5ez5 5fbl 5fbq 5fbr 5fbv 5fbw 5jcz
        RFIP3_HUMAN | O75154: 2d7c 2hv8 4d0m 4uj4

(-) Related Entries Specified in the PDB File

4uj4 CRYSTAL STRUCTURE OF HUMAN RAB11-RABIN8-FIP3
4uj5 CRYSTAL STRUCTURE OF HUMAN RAB11-RABIN8-FIP3